Bioconductor Gff3

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dexseq python gtf gff3 annotation

4.9 years ago Raito92 ▴ 60

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annotation gff3 gff genome

updated 5.6 years ago by Michael Lawrence ★ 11k • written 5.6 years ago by mictadlo ▴ 10

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parclip bedtools bed files gff3

7.2 years ago linuxborg2 • 0

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txdb gff3 polycistronic transcript

7.4 years ago Piotr Gawronski • 0

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3.7k

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GenomicFeatures GFF3

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by Dario Strbenac ★ 1.6k

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AnnotationHub Gencode GFF3 FASTA News

9.6 years ago Sonali Arora ▴ 390

6 results • Page 1 of 1

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Comment: Merging EPICV1 and V2 betas by Garbayo • 0

[BitLife][1]: Life Simulator, usually referred to as BitLife, is a mobile life simulator game created by developer CandyWriter LLC on Septe…

Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …

Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0

Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge

Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0

Thank you for your reply James. I was worried that it was my mistake.

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Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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