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biocfilecache
•
reset
6
votes
12
replies
4.7k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 3 days ago
shepherl
3.8k
3
votes
6
replies
1.3k
views
Caching bam index files using BiocFileCache
BiocFileCache
23 months ago • updated 18 months ago
kent.riemondy
▴ 20
2
votes
8
replies
2.4k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.0 years ago by
Martin Morgan
25k • written 2.0 years ago by
ZheFrench
▴ 50
0
votes
1
reply
638
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 2.6 years ago by
Mike Smith
★ 6.5k • written 2.6 years ago by
pierrick.roger
• 0
0
votes
2
replies
1.3k
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
judith.risse
• 0
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.8k
0
votes
3
replies
693
views
How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 4.1 years ago by
shepherl
3.8k • written 4.1 years ago by
Qiang
▴ 80
7 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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