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biocupgrade
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reset
8
votes
4
replies
6.9k
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Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Simon Coetzee
▴ 50
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
2
votes
1
reply
1.6k
views
Update bioconductor in R 3.2.4
GenomicRanges
biocupgrade
updated 8.0 years ago by
Dan Tenenbaum
★ 8.2k • written 8.0 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
4
replies
1.7k
views
Error in upgrading bioconductor
bioconductor
biocupgrade
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
laksharikrish
• 0
0
votes
1
reply
1.2k
views
Upgrading bioconductor - how do I change the contrib.url?
biocinstaller
biocupgrade
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
ail27
• 0
0
votes
2
replies
1.2k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite
biocupgrade
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
dan.gatti
• 0
0
votes
1
reply
609
views
Older version is broken. How to remove it or update it?
Logolas
old-version
BiocUpgrade
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
Kushal K Dey
▴ 10
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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