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biostrings
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3
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4
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307
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Store output of matchPWM()
biostrings
Biostrings
25 days ago • updated 13 days ago
mat149
▴ 70
0
votes
1
reply
162
views
Trimming a section of a scaffold from a genome
Biostrings
GenomeAssembly
updated 8 weeks ago by
James W. MacDonald
66k • written 8 weeks ago by
Karen
• 0
2
votes
2
replies
271
views
From a DNAStringSet to a data.frame
Biostrings
8 weeks ago
ramiro.barrantes
▴ 10
1
vote
5
replies
471
views
Biostrings: read*StringSet() functions leave open file handles
Biostrings
11 weeks ago • updated 10 weeks ago
Gerhard Thallinger
▴ 180
0
votes
0
replies
177
views
How to search for a string in a DNAStringSet dataset?
Biostrings
4 months ago
Angela Michalichyn
• 0
2
votes
6
replies
805
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
nromerov
• 0
1
vote
3
replies
561
views
AAbin vs DNAbin structures
Biostrings
updated 8 months ago by
James W. MacDonald
66k • written 8 months ago by
rogerb
• 0
0
votes
2
replies
726
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray
Alignment
Biostrings
written 13 months ago by
sandmann.t
▴ 70
0
votes
5
replies
2.9k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 21 days ago
Henrik Bengtsson
★ 2.4k
9 results • Page
1 of 1
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Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
BioinfGuru
▴ 30
I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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