Showing : biostrings • reset
0
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2
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1.5k
views
feature request - pairwiseAlignment() in Biostrings
Biostrings Biostrings
updated 15.3 years ago by ★ 1.6k • written 15.3 years ago by ▴ 190
0
votes
5
replies
2.8k
views
unexpected behaviour of pairwiseAlignment() in Biostrings
Alignment Biostrings Alignment Biostrings
15.4 years ago • updated 15.3 years ago Coghlan, Avril ▴ 190
0
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0
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765
views
Biostrings_2.16.5 / IRanges_1.7.1 :: Broken(?) -- DISREGARD
Cancer Biostrings IRanges Cancer Biostrings IRanges
15.4 years ago Steve Lianoglou ★ 13k
0
votes
9
replies
2.4k
views
Error with unique
Biostrings Biostrings
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 210
0
votes
5
replies
1.6k
views
Biostrings C interface :: example not compiling
Biostrings Biostrings
updated 15.6 years ago by ▴ 290 • written 15.6 years ago by ▴ 210
0
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0
replies
1.1k
views
[Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
Biostrings ChIPpeakAnno Biostrings ChIPpeakAnno
15.6 years ago Julie Zhu ★ 4.3k
0
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1
reply
4.0k
views
read.DNAStringSet
Biostrings Biostrings
updated 15.7 years ago by ★ 1.7k • written 15.7 years ago by ▴ 60
0
votes
4
replies
2.3k
views
BLAST E-value
Biostrings Biostrings
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ▴ 60
0
votes
1
reply
1.3k
views
concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 15.8 years ago by 21k • written 15.8 years ago by ★ 1.1k
0
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0
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1.7k
views
Distinguish Synonymous vs. Non-synonymous SNPs
Sequencing Biostrings biomaRt Sequencing Biostrings biomaRt
15.8 years ago Michael Dondrup ▴ 550
0
votes
5
replies
1.9k
views
from TF DNA binding motif to downstream genes?
Transcription Biostrings Transcription Biostrings
updated 15.8 years ago by ★ 1.6k • written 15.8 years ago by ★ 1.1k
1
vote
9
replies
3.7k
views
BLAST search sequence for species ID from R?
Biostrings PROcess Biostrings PROcess
updated 15.9 years ago by ▴ 550 • written 15.9 years ago by ▴ 40
0
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0
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1.4k
views
suggested Biostrings library function for printing an alignment
Alignment Biostrings Alignment Biostrings
16.0 years ago Coghlan, Avril ▴ 190
0
votes
2
replies
1.5k
views
how to use writeFASTA in modality "append"
Transcription miRNA Biostrings Transcription miRNA Biostrings
updated 16.3 years ago by 16k • written 16.3 years ago by ▴ 870
0
votes
1
reply
1.4k
views
R: how to use writeFASTA in modality "append"
Transcription miRNA Biostrings Transcription miRNA Biostrings
updated 16.3 years ago by ★ 13k • written 16.3 years ago by ▴ 870
0
votes
4
replies
1.9k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
16.4 years ago mauede@alice.it ▴ 870
0
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0
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1.4k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
16.4 years ago michael watson IAH-C ★ 3.4k
0
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1
reply
1.5k
views
R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 16.4 years ago by 21k • written 16.4 years ago by ▴ 870
0
votes
5
replies
3.0k
views
Fisher-Yates algorithm for DNA shuffling ?
Biostrings Biostrings
updated 16.4 years ago by 16k • written 16.4 years ago by ★ 3.4k
0
votes
2
replies
2.7k
views
PWM matching using matchPWM in Biostrings
Transcription BSgenome Biostrings BSgenome Transcription BSgenome Biostrings BSgenome
updated 16.5 years ago by ★ 1.6k • written 16.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
readFASTA Arguments
Biostrings Biostrings
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
16.5 years ago Hervé Pagès 16k
0
votes
1
reply
1.0k
views
Compilation or syntax error in IRanges sort_util.c package
Biostrings IRanges Biostrings IRanges
updated 16.6 years ago by 16k • written 16.6 years ago by ▴ 20
0
votes
0
replies
1.1k
views
multiple locations for probeset in hgu133plus2CHRLOC vs. UCSC PSL data
Alignment Annotation Cancer hgu133plus2 probe affy Biostrings Alignment Annotation Cancer
16.8 years ago rgentleman ★ 5.5k
0
votes
4
replies
1.6k
views
Course material for "Using Bioconductor for ChIP-seq experiments"
Sequencing Cancer BSgenome annotate Biostrings BSgenome Sequencing Cancer BSgenome
updated 17.0 years ago by ▴ 10 • written 17.0 years ago by ★ 1.6k
0
votes
1
reply
1.2k
views
question regarding BSGenome/Biostrings
celegans Biostrings celegans Biostrings
updated 17.0 years ago by 16k • written 17.0 years ago by ▴ 210
0
votes
4
replies
3.1k
views
How to get closest gene around chromosome location? [biomaRt]
Biostrings biomaRt Biostrings biomaRt
updated 17.0 years ago by 21k • written 17.0 years ago by ★ 4.1k
0
votes
4
replies
2.8k
views
BSgenomes vs ENSEMBL
Transcription Annotation BSgenome annotate Biostrings BSgenome Transcription Annotation
updated 17.1 years ago by 16k • written 17.1 years ago by ★ 4.1k
0
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0
replies
1.0k
views
Removing probes from AffyBatch
cdf probe Biostrings cdf probe Biostrings
17.1 years ago lgautier@altern.org ▴ 950
0
votes
1
reply
1.1k
views
Removing probes from AffyBatch
Biostrings Biostrings
updated 17.1 years ago by ★ 2.0k • written 17.1 years ago by ▴ 100
0
votes
1
reply
842
views
DNASuffixArray
Biostrings Biostrings
updated 17.2 years ago by 16k • written 17.2 years ago by ▴ 20
0
votes
1
reply
999
views
BioC2008 Talks and Lab Materials?
Alignment GO Biostrings Alignment GO Biostrings
updated 17.2 years ago by ▴ 540 • written 17.2 years ago by ★ 2.0k
0
votes
3
replies
1.3k
views
dumb question: using Biostrings (or something else) to translate DNA bases to amino acid codes
Biostrings Biostrings
updated 17.8 years ago by ▴ 280 • written 17.8 years ago by ★ 1.1k
0
votes
2
replies
1.9k
views
sequence search using a position weight matrix?
Biostrings cosmo Biostrings cosmo
updated 18.1 years ago by 16k • written 18.1 years ago by ★ 1.1k
0
votes
1
reply
1.2k
views
Installing BioC + R 2.6: warnings
Biostrings Biostrings
updated 18.1 years ago by 16k • written 18.1 years ago by ▴ 320
0
votes
0
replies
815
views
DNAString ("GC") -- error in nchar? [resolved]
Biostrings Biostrings
18.1 years ago Paul Shannon ★ 1.1k
0
votes
12
replies
2.1k
views
DNAString ("GC") -- error in nchar?
Biostrings Biostrings
updated 18.1 years ago by 25k • written 18.1 years ago by ★ 1.1k
0
votes
3
replies
1.2k
views
[biocpkgs] suggestions on package matchprobes
Cancer Biostrings Cancer Biostrings
updated 19.2 years ago by ▴ 120 • written 19.2 years ago by ★ 5.5k
0
votes
4
replies
2.0k
views
advice on Biostrings
Biostrings Biostrings
updated 19.7 years ago by 25k • written 19.7 years ago by ★ 2.3k
0
votes
2
replies
1.3k
views
is Biostrings being maintained?
Biostrings Biostrings
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 30
0
votes
0
replies
1.3k
views
How to download package bundles?
Biobase edd AnnBuilder Biostrings Biobase edd AnnBuilder Biostrings
21.3 years ago Peter Baker CMIS, Indooroopilly ▴ 80
0
votes
0
replies
1.1k
views
ath1121501probe_1.0 error (was GCRMA missing value error on ATH1 chip)
GO probe affy gcrma Biostrings GO probe affy gcrma Biostrings
21.8 years ago Matthew Hannah ▴ 940
292 results • Page 6 of 6
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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