Bioconductor Bowtie

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noiseq rsubread tophat bowtie bowtie2

6.4 years ago Marcelo Laia ▴ 450

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Bowtie quasr rnaseq

updated 9.8 years ago by Dario Strbenac ★ 1.6k • written 9.8 years ago by tarek.mohamed ▴ 10

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deseq deseq2 edger tophat bowtie

10.4 years ago ysdel ▴ 40

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r bowtie

updated 10.4 years ago by Sean Davis 21k • written 10.4 years ago by a.afshinfard ▴ 10

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Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0

Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …

Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0

When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

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A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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