Bioconductor Bowtie

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r bowtie

updated 10.6 years ago by Sean Davis 21k • written 10.6 years ago by a.afshinfard ▴ 10

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Bowtie quasr rnaseq

updated 10.0 years ago by Dario Strbenac ★ 1.6k • written 10.0 years ago by tarek.mohamed ▴ 10

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9

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deseq deseq2 edger tophat bowtie

10.6 years ago ysdel ▴ 40

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noiseq rsubread tophat bowtie bowtie2

6.6 years ago Marcelo Laia ▴ 450

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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