Bioconductor Bplapply

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bioconductor bplapply bpiterate iterator BiocParallel

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by gabriel.hoffman ▴ 170

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bplapply progressbar

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by wt215 • 0

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biocparallel bplapply

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by ioannis.vardaxis ▴ 30

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biocparallel bplapply Suse error process

updated 8.1 years ago by jan.winter • 0 • written 8.1 years ago by schweringmarc01 • 0

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bplapply multicoreParam mac os x

8.2 years ago • updated 8.1 years ago gmerino ▴ 20

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1.3k

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biocparallel bplapply multicore

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by Aaron Lun ★ 28k

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summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting

8.5 years ago ErickF ▴ 40

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5.9k

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bplapply

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by benjamin.phillips22 ▴ 10

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bplapply biocparallel deseq2

updated 9.4 years ago by Valerie Obenchain ★ 6.8k • written 9.4 years ago by Lauren ▴ 40

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biocparallel bplapply

9.6 years ago akaever ▴ 30

10 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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