Showing : brainarray • reset
2
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4
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2.1k
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rma summarization error when normalizing using oligo and brainarray cdf
oligo brainarray mbni
6.4 years ago Moosa • 0
0
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5
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2.5k
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Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 7.4 years ago by 68k • written 7.4 years ago by • 0
4
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3
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1.6k
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How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 8.3 years ago by 68k • written 8.3 years ago by • 0
2
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1
reply
2.0k
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BrainArray Custom CDFs and oligo
oligo brainarray rma customcdf
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
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3
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1.9k
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UPC and Sequence file to remove GC bias
UPC_Generic_ExpressionSet brainarray
updated 10.6 years ago by ▴ 600 • written 10.6 years ago by ▴ 20
5 results • Page 1 of 1
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be far…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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