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brainarray
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2
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4
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rma summarization error when normalizing using oligo and brainarray cdf
oligo
brainarray
mbni
6.2 years ago
Moosa
• 0
0
votes
5
replies
2.4k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor
brainarray
genefilter
oligo
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
kdyson
• 0
4
votes
3
replies
1.5k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays
expressionset
biobase
annotation
brainarray
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
lykhenko.olexandr
• 0
2
votes
1
reply
1.9k
views
BrainArray Custom CDFs and oligo
oligo
brainarray
rma
customcdf
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
lcordeiro
• 0
0
votes
3
replies
1.9k
views
UPC and Sequence file to remove GC bias
UPC_Generic_ExpressionSet
brainarray
updated 10.5 years ago by
Stephen Piccolo
▴ 600 • written 10.5 years ago by
sanj
▴ 20
5 results • Page
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Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Comment: GO.db and others package Download failure
by
Skyler
• 0
Hi James, Below I have inserted all of my code. I have run r as an administrator and not as an administrator. I have changed my CRANmirror …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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