Bioconductor Brainarray

Showing : brainarray • reset

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oligo brainarray mbni

6.4 years ago Moosa • 0

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2.5k

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bioconductor brainarray genefilter oligo

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by kdyson • 0

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affymetrix microarrays expressionset biobase annotation brainarray

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by lykhenko.olexandr • 0

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oligo brainarray rma customcdf

updated 8.8 years ago by James W. MacDonald 68k • written 8.8 years ago by lcordeiro • 0

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UPC_Generic_ExpressionSet brainarray

updated 10.7 years ago by Stephen Piccolo ▴ 600 • written 10.7 years ago by sanj ▴ 20

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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