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bsmooth
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How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq
Bsmooth
updated 6 months ago by
Adam
• 0 • written 9.2 years ago by
unmeshj
• 0
0
votes
1
reply
619
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
5.8 years ago
nilaycan
• 0
0
votes
6
replies
1.8k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq
bsmooth
6.6 years ago • updated 6.5 years ago
ravi.tharakan
• 0
0
votes
0
replies
1.1k
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bsseq - dmrFinder error
bsseq r package
bsmooth
dmrFinder
6.9 years ago
parker
• 0
0
votes
6
replies
1.9k
views
BSmooth error during the smoothing step for a subset of files
bsseq
bsmooth
updated 7.1 years ago by
Peter Hickey
▴ 740 • written 7.1 years ago by
brandon.le
• 0
1
vote
3
replies
1.4k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq
bsmooth
7.3 years ago
zuupcat
• 0
6 results • Page
1 of 1
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Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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