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without replicate
•
reset
1
vote
6
replies
2.2k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
written 6.9 years ago by
Camila Orellana
▴ 10
0
votes
1
reply
503
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
5.2 years ago
nilaycan
• 0
0
votes
3
replies
864
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 5.2 years ago by
Michael Love
40k • written 5.2 years ago by
bahlv
• 0
1
vote
5
replies
2.5k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 5.4 years ago by
Michael Love
40k • written 5.4 years ago by
Tony
• 0
3
votes
6
replies
3.8k
views
Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
5.9 years ago
Hesh
▴ 10
4
votes
5
replies
2.2k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
knipehf
• 0
3
votes
6
replies
1.0k
views
Question about edgeR usage with one case and multiple controls
edgeR
differential expression
without replicate
7.3 years ago
gavin.oliver
• 0
0
votes
3
replies
1.3k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind
without replicate
updated 7.5 years ago by
Gord Brown
▴ 650 • written 7.5 years ago by
yiweihe
• 0
2
votes
7
replies
2.5k
views
edgeR for with no Replicate
edger
without replicate
updated 7.8 years ago by
Yunshun Chen
▴ 810 • written 7.8 years ago by
Sushant Pawar
• 0
1
vote
1
reply
1.4k
views
edgeR for without Replicate
edger
without replicate
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
Sushant Pawar
• 0
0
votes
10
replies
4.2k
views
DESeq2 analysis without Replicate
without Replicate
deseq2
updated 2.2 years ago by
Michael Love
40k • written 7.8 years ago by
Sushant Pawar
• 0
11 results • Page
1 of 1
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Answer: Gviz: UcscTrack and "GC Percent" information
by
Daniel E. Weeks
▴ 20
**Answer** In https://github.com/ivanek/Gviz/issues/71 an update that fixes this issue was documented - there it is stated that "…
Comment: Biostrings error at retrieving protein sequences
by
James W. MacDonald
63k
It depends on what kind of whitespace it is. If the whitespace is just a space, then it will work. But if it's a tab, it won't. ``` > gsub…
Comment: Biostrings error at retrieving protein sequences
by
nromerov
• 0
If i write it like ```r gsub(" .*", "", names(protein_sequences)) ``` it will delet all the extra information if it is on the AAString…
Comment: bug in block.plsda from mixOmics?
by
Lluís Revilla Sancho
▴ 720
Oh, sorry for the noise, I see that just after Bioconductor 3.16 the bug is fixed in both 3.17 and in devel. Thanks for checking.
Answer: Mixed up sample info with plotPCA
by
Michael Love
40k
I can already tell there is code you aren't showing. For example, your `pcaData` has a variable 'group' that isn't in the previous sample i…
Votes
Answer: Mouse to Human Genes using bioconductor
Mouse to Human Genes using bioconductor
Answer: Biostrings error at retrieving protein sequences
Answer: Biostrings error at retrieving protein sequences
Answer: How do I merge a list of GRanges?
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