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without replicate
•
reset
0
votes
1
reply
355
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
4.1 years ago
nilaycan
• 0
0
votes
3
replies
566
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 4.1 years ago by
Michael Love
37k • written 4.1 years ago by
bahlv
• 0
1
vote
5
replies
1.6k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 4.2 years ago by
Michael Love
37k • written 4.2 years ago by
Tony
• 0
3
votes
6
replies
2.7k
views
Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
4.7 years ago
Hesh
• 0
1
vote
5
replies
1.5k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
5.7 years ago
Camila Orellana
▴ 10
4
votes
5
replies
1.9k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 6.1 years ago by
Aaron Lun
★ 27k • written 6.1 years ago by
knipehf
• 0
3
votes
6
replies
748
views
Question about edgeR usage with one case and multiple controls
edgeR
differential expression
without replicate
6.1 years ago
gavin.oliver
• 0
0
votes
3
replies
1.1k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind
without replicate
updated 6.4 years ago by
Gord Brown
▴ 640 • written 6.4 years ago by
yiweihe
• 0
2
votes
7
replies
2.0k
views
edgeR for with no Replicate
edger
without replicate
updated 6.6 years ago by
Yunshun Chen
▴ 770 • written 6.6 years ago by
Sushant Pawar
• 0
1
vote
1
reply
1.1k
views
edgeR for without Replicate
edger
without replicate
updated 6.6 years ago by
Aaron Lun
★ 27k • written 6.6 years ago by
Sushant Pawar
• 0
0
votes
10
replies
3.3k
views
DESeq2 analysis without Replicate
without Replicate
deseq2
updated 13 months ago by
Michael Love
37k • written 6.7 years ago by
Sushant Pawar
• 0
11 results • Page
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Comment: Data input for aracne2regulon function in viper package
by
xlal
• 0
You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…
Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Alejandro Reyes
★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
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