Showing : without replicate • reset
0
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BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
3.2 years ago nilaycan • 0
0
votes
3
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448
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 3.2 years ago by 34k • written 3.2 years ago by • 0
1
vote
5
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957
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steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 3.3 years ago by 34k • written 3.3 years ago by • 0
3
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6
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2.2k
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Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
3.8 years ago Hesh • 0
1
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5
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1.2k
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
4.9 years ago • updated 4.8 years ago Camila Orellana ▴ 10
4
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5
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1.7k
views
edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 5.2 years ago by ★ 27k • written 5.2 years ago by • 0
3
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6
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669
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Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
5.3 years ago gavin.oliver • 0
0
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3
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948
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to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 5.5 years ago by ▴ 640 • written 5.5 years ago by • 0
2
votes
7
replies
1.7k
views
edgeR for with no Replicate
edger without replicate
updated 5.8 years ago by ▴ 770 • written 5.8 years ago by • 0
1
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1
reply
1.0k
views
edgeR for without Replicate
edger without replicate
updated 5.8 years ago by ★ 27k • written 5.8 years ago by • 0
0
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10
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2.7k
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DESeq2 analysis without Replicate
without Replicate deseq2
updated 9 weeks ago by 34k • written 5.8 years ago by • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: VST transformation and covariates in the TCGA TARGET GTEx dataset by Michael Love 34k
If this is taking too long, you can run it on a subsample (e.g. hundreds of samples) to identify parameters for the VST, and then apply it …
Comment: "full model matrix is less than full rank" by fernandogs97 • 0
Hello ATpoint, thank you very much for your fast and helpful response, finally I corrected the error by changing the separator, instead of …
Comment: unable to load shared object Rsamtools.dll': by Mike Smith ★ 5.1k
Can you include the command you're running (I guess it's `BiocManager::install("Rsamtools", type = "source")` )? It would also be useful to…
Comment: unable to load shared object Rsamtools.dll': by franck.richard • 0
Finally, I only encounter this problem with Rsamtools. It works fine with the other packages. Thank you for your help!
Comment: Unique GPos taking into account mcols by maltethodberg ▴ 140
Yes, I managed to find those functions via the VariantAnnotation package. The "Quad" versions are very handy for matching seqnames/pos/effe…
Votes
Answer: "full model matrix is less than full rank"
Comment: Unique GPos taking into account mcols
Comment: deseq2 machine sizing best practices for very large data set
Comment: Warning messages on Apple M1 BigSur
Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset
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