Bioconductor Without replicate

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limma edger timecourse without replicate voom

written 9.2 years ago by Camila Orellana ▴ 10

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991

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bsmooth without replicate dimension

7.6 years ago nilaycan • 0

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1.5k

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deseq2 time-series without replicate

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by bahlv • 0

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deseq2 without replicate no replicates

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by Tony • 0

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6.8k

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diffbind bioconductor differential binding analysis without replicate chipseq

8.2 years ago Hesh ▴ 10

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3.2k

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edger differential gene expression without replicate nested design help

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by knipehf • 0

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2.1k

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edgeR differential expression without replicate

9.7 years ago gavin.oliver • 0

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1.8k

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diffbind without replicate

updated 9.9 years ago by Gord Brown ▴ 670 • written 9.9 years ago by yiweihe • 0

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3.5k

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edger without replicate

updated 10.2 years ago by Yunshun Chen ▴ 900 • written 10.2 years ago by Sushant Pawar • 0

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1.8k

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edger without replicate

updated 10.2 years ago by Aaron Lun ★ 29k • written 10.2 years ago by Sushant Pawar • 0

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5.8k

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without Replicate deseq2

updated 4.6 years ago by Michael Love 43k • written 10.2 years ago by Sushant Pawar • 0

11 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760