Bioconductor Build

Showing : build • reset

votes

replies

1.1k

views

build genome

2.6 years ago Dmitry • 0

votes

994

views

build BuildReport

updated 3.8 years ago by Mike Smith ★ 6.6k • written 3.8 years ago by Meriem • 0

vote

684

views

build

updated 4.0 years ago by shepherl 4.2k • written 4.0 years ago by hstern2 • 0

votes

replies

1.3k

views

package build build/check error check release News

7.6 years ago shepherl 4.2k

vote

replies

1.9k

views

build testthat cmd check

updated 10.0 years ago by James W. MacDonald 68k • written 10.0 years ago by Peter • 0

votes

replies

1.6k

views

r build genome chicken-sheme

10.0 years ago pertille • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

Awards • All