Biostar Build/check error

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package development r package problem build/check error mmappr2

3.6 years ago Kyle Johnsen ▴ 20

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package build build/check error check release News

4.1 years ago shepherl 3.1k

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bioccheck build/check error

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by ihnatova • 0

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biocstyle vignettes build/check error latex

updated 5.4 years ago by Andrzej Oleś ▴ 750 • written 5.4 years ago by Mattia ▴ 10

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build/check error

updated 6.5 years ago by brian.long ▴ 10 • written 6.5 years ago by thucmi • 0

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Comment: DiffBind GreyListChIP error: Error: BiocParallel errors by ksong • 0

Hi Rory, Thank you for your reply! Here is the my `sessionInfo()`: Please let me know what you think. I really appreciate your help! …

Comment: EnrichGO not working with db created from annotationhub by Lucía • 0

I used the gtf file from ncbi Here: https://www.ncbi.nlm.nih.gov/assembly/GCF_900626175.2/ Everything was taken from there

Comment: EnrichGO not working with db created from annotationhub by Lucía • 0

I don't understand why they don't match. I got the gtf and fasta from the ncbi website, the cs10 genome assembly, which is the same as that…

Comment: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k

No, basically what is meant is that your input ids should match with those in the `OrgDb`. Also your significant genes should be *part of* …

Comment: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k

AFAIK the annotation file present at the `AnnotationHub` is not generated from a GTF/GFF file, but from data directly downloaded from the N…

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Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0

Answer: Use MulticoreParam under BatchtoolsParam

Answer: Variance explained (coefficient of determination) in edgeR

HTSeq Counts no longer available

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Popular Question to Johannes Rainer ★ 1.9k