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bwa
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2
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4
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3.7k
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isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
bwa
Rsamtools
4.7 years ago
sbcn
▴ 80
0
votes
0
replies
1.6k
views
problem for finding relative Version GTF file for my .fa file
alignment
BWA
Burrows-Wheeler Alignment Tool
7.5 years ago
modarzi
▴ 10
1
vote
11
replies
3.7k
views
rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread
BWA
NGS
updated 9.3 years ago by
Wei Shi
★ 3.6k • written 9.3 years ago by
tarek.mohamed
▴ 10
1
vote
1
reply
2.0k
views
MeDIPS and use of the 'bwa' parameter
R
medip-seq
medips
bwa
updated 9.4 years ago by
Lukas Chavez
▴ 570 • written 9.4 years ago by
stb
• 0
0
votes
5
replies
5.5k
views
bioconductor package for BWA-MEM ?
bwa
ngs
updated 10.4 years ago by
Gordon Smyth
53k • written 10.4 years ago by
KB
▴ 50
5 results • Page
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Comment: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt
by
horaortiz8
• 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit
by
Mark
• 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Gordon Smyth
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