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bwa
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isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
bwa
Rsamtools
3.2 years ago
sbcn
▴ 80
0
votes
0
replies
1.1k
views
problem for finding relative Version GTF file for my .fa file
alignment
BWA
Burrows-Wheeler Alignment Tool
6.0 years ago
modarzi
▴ 10
1
vote
11
replies
2.6k
views
rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread
BWA
NGS
updated 7.8 years ago by
Wei Shi
★ 3.6k • written 7.8 years ago by
tarek.mohamed
▴ 10
1
vote
1
reply
1.5k
views
MeDIPS and use of the 'bwa' parameter
R
medip-seq
medips
bwa
updated 7.9 years ago by
Lukas Chavez
▴ 570 • written 7.9 years ago by
stb
• 0
0
votes
5
replies
4.7k
views
bioconductor package for BWA-MEM ?
bwa
ngs
updated 8.9 years ago by
Gordon Smyth
51k • written 8.9 years ago by
KB
▴ 50
5 results • Page
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Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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