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cancer
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0
votes
0
replies
841
views
Limma and randomized block design for time-course microarray experiment
Microarray
Cancer
Microarray
Cancer
18.5 years ago
Serge Eifes
▴ 90
0
votes
2
replies
1.6k
views
Error with arrayQuality
Microarray
Cancer
hexbin
limma
marray
convert
Microarray
Cancer
hexbin
limma
marray
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Shripad Sinari
▴ 50
0
votes
4
replies
1.7k
views
Removing libraries or using a particular function
Cancer
DNAcopy
Cancer
DNAcopy
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1000
views
Outputting dendrogram with large numbers of genes, without losing resolution
Cancer
ASSIGN
Cancer
ASSIGN
18.5 years ago
Aedin Culhane
▴ 510
0
votes
1
reply
1.4k
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer
Ruuid
tkWidgets
graph
GOstats
Cancer
Ruuid
tkWidgets
graph
GOstats
updated 18.5 years ago by
Alex
▴ 10 • written 18.5 years ago by
Seth Falcon
★ 7.4k
0
votes
0
replies
688
views
Bioconductor training at BioC2007
Cancer
Cancer
18.5 years ago
Seth Falcon
★ 7.4k
0
votes
4
replies
1.5k
views
Sequence output formatting
Cancer
Cancer
updated 18.5 years ago by
Tobias Straub
▴ 430 • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
Converting Seglist to segments file
Cancer
convert
DNAcopy
snapCGH
cghMCR
Cancer
convert
DNAcopy
snapCGH
cghMCR
18.6 years ago
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.6k
views
CGH analysis warning messages
Cancer
CGH
snapCGH
Cancer
CGH
snapCGH
updated 18.6 years ago by
Ian Roberts
▴ 70 • written 18.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
Biomart with human genes NCBI 35
Microarray
Cancer
biomaRt
Microarray
Cancer
biomaRt
18.6 years ago
Steffen Durinck
▴ 580
0
votes
1
reply
1.5k
views
Affymetrix Human Exon Array MPS and PS files contain different probeset groups
Cancer
Cancer
updated 18.6 years ago by
Stephen Henderson
★ 1.0k • written 18.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.7k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH
Survival
Cancer
Breast
Biobase
annotate
genefilter
geneplotter
multtest
limma
aCGH
18.6 years ago
Steven McKinney
▴ 310
0
votes
7
replies
2.1k
views
Gene Ontology relationships
Cancer
GOstats
Cancer
GOstats
updated 18.6 years ago by
Dick Beyer
★ 1.4k • written 18.6 years ago by
Seth Falcon
★ 7.4k
0
votes
1
reply
853
views
Batch sequence retrieval
Cancer
annotate
Cancer
annotate
updated 18.6 years ago by
Sean Davis
21k • written 18.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.5k
views
warning (condition has length>1) when reading in Agilent hyb text files
Cancer
Cancer
18.6 years ago
Seth Falcon
★ 7.4k
0
votes
3
replies
1.3k
views
CLF/PGF parser
Microarray
Cancer
affy
affxparser
Microarray
Cancer
affy
affxparser
updated 18.6 years ago by
James W. MacDonald
68k • written 18.6 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
1.2k
views
Fwd: limma gene symbol not avialable problem
Microarray
Annotation
Cancer
cdf
probe
annotate
affy
affydata
limma
matchprobes
affyio
18.6 years ago
lidaof
▴ 450
0
votes
5
replies
1.6k
views
linkage distances
Cancer
Cancer
updated 18.6 years ago by
David Ruau
▴ 190 • written 18.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.0k
views
problem with hyperGTest function
GO
Cancer
cdf
GOstats
GO
Cancer
cdf
GOstats
18.6 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.3k
views
Bioconductor web page
GO
Cancer
tkWidgets
reposTools
widgetTools
simpleaffy
affyQCReport
affyio
GO
Cancer
18.6 years ago
Seth Falcon
★ 7.4k
0
votes
4
replies
2.7k
views
quantile normalization of one dataset to another
Cancer
Cancer
updated 18.7 years ago by
Ben Bolstad
★ 1.2k • written 18.7 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
Illumina BeadArray Annotation
Annotation
Cancer
lumiMouseV1
lumi
trigger
Annotation
Cancer
lumiMouseV1
lumi
trigger
18.7 years ago
Simon Lin
▴ 270
0
votes
2
replies
1.1k
views
Labelling subplots a), b) etc.
Cancer
Cancer
updated 18.7 years ago by
r.athanasiadou
▴ 100 • written 18.7 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
951
views
Bioconductor installation
Cancer
Cancer
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
966
views
RMA warning message about missing se.exprs
Survival
Cancer
cdf
genefilter
simpleaffy
Survival
Cancer
cdf
genefilter
simpleaffy
updated 18.7 years ago by
Martin Morgan
25k • written 18.7 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
0
replies
1.0k
views
Note in check report was: [Bioc-devel] Recent changes in R
Cancer
annotate
genefilter
siggenes
Cancer
annotate
genefilter
siggenes
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.6k
views
tcl/tk and biocLite
Genetics
Cancer
tkWidgets
widgetTools
marray
Genetics
Cancer
tkWidgets
widgetTools
marray
updated 18.7 years ago by
Seth Falcon
★ 7.4k • written 18.7 years ago by
grischa tödt
▴ 30
0
votes
0
replies
1.2k
views
tcl/tk dependency of biocLite
Genetics
Cancer
tkWidgets
widgetTools
marray
Genetics
Cancer
tkWidgets
widgetTools
marray
18.7 years ago
grischa tödt
▴ 30
0
votes
6
replies
2.1k
views
help in 2-color data normalization
Normalization
Cancer
Colon
Normalization
Cancer
Colon
updated 18.7 years ago by
Jeremy Davis-Turak
▴ 50 • written 18.7 years ago by
Jianping Jin
▴ 890
0
votes
4
replies
1.1k
views
Is a change in kit significant?
Clustering
Cancer
limma
Clustering
Cancer
limma
updated 18.7 years ago by
Francois Pepin
★ 1.3k • written 18.7 years ago by
Daniel Brewer
★ 1.9k
0
votes
6
replies
1.9k
views
install Monograph problem
Cancer
widgetTools
Cancer
widgetTools
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
766
views
Suggestions for upgrading BioC (was: ReadAffy problem)
Cancer
affyio
Cancer
affyio
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
6
replies
1.9k
views
Affy EXON Array: iterPLIER or RMA
Cancer
plier
Cancer
plier
updated 18.7 years ago by
James W. MacDonald
68k • written 18.7 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.4k
views
LAST ANNOUNCEMENT: CSAMA'07 [COURSE]
Microarray
Proteomics
Preprocessing
Cancer
Microarray
Proteomics
Preprocessing
Cancer
18.7 years ago
stefano iacus
▴ 430
0
votes
6
replies
1.9k
views
hyperGTest
GO
Cancer
GOstats
Category
GO
Cancer
GOstats
Category
updated 18.7 years ago by
Naomi Altman
★ 6.0k • written 18.7 years ago by
Seth Falcon
★ 7.4k
0
votes
2
replies
1.1k
views
limma read.maimages for scanarray express .csv files
Cancer
limma
Cancer
limma
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
2.0k
views
GOstats: hyperGTest function
Cancer
GOstats
Cancer
GOstats
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
858
views
Finding all combinations from groups
Cancer
Cancer
updated 18.7 years ago by
Joern Toedling
▴ 730 • written 18.7 years ago by
Daniel Brewer
★ 1.9k
3
votes
0
replies
4.1k
views
biocLite() fails to install all limma dependencies from CRAN
Cancer
limma
Cancer
limma
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.4k
views
BioC 2.0 is available
SNP
Microarray
Genetics
Annotation
Visualization
Bayesian
Survival
GUI
Cancer
adme16cod
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
811
views
splitting a data frame
Cancer
Cancer
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
718
views
GOstats hyperGTest( ): Counts of EntrezIDs returned from summary() are not same as the numbers of EntrezIDs extracted from probeSetSummary()
Microarray
GO
Cancer
Microarray
GO
Cancer
18.8 years ago • updated 18.7 years ago
James W. MacDonald
68k
0
votes
3
replies
1.8k
views
Annotation of U95av2 array
Microarray
Genetics
Annotation
GO
Cancer
hgu95av2
probe
affy
AnnBuilder
PROcess
Genetics
updated 18.8 years ago by
Nianhua Li
▴ 870 • written 18.8 years ago by
James W. MacDonald
68k
0
votes
5
replies
1.8k
views
homology package question
Microarray
Cancer
Microarray
Cancer
updated 18.8 years ago by
John Zhang
★ 2.9k • written 18.8 years ago by
James W. MacDonald
68k
0
votes
6
replies
1.3k
views
Point plot against labels and reordering
Cancer
probe
Cancer
probe
updated 18.8 years ago by
James W. MacDonald
68k • written 18.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.4k
views
Biomart: Does it support IMAGE clone IDs
Microarray
Cancer
biomaRt
Microarray
Cancer
biomaRt
updated 18.8 years ago by
Steffen Durinck
▴ 580 • written 18.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
992
views
Limma: All probes come out as significant
Cancer
Biobase
limma
Cancer
Biobase
limma
updated 18.8 years ago by
Sean Davis
21k • written 18.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.1k
views
Limma error message
Cancer
limma
Cancer
limma
updated 18.8 years ago by
Seth Falcon
★ 7.4k • written 18.8 years ago by
Richard Friedman
★ 2.0k
0
votes
9
replies
1.9k
views
matrix row/column displayed as a list
Cancer
Cancer
updated 18.8 years ago by
Seth Falcon
★ 7.4k • written 18.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
4
replies
11k
views
Correlation matrix and pca on matrix with NA values
Cancer
Cancer
updated 18.8 years ago by
Aedin Culhane
▴ 510 • written 18.8 years ago by
Daniel Brewer
★ 1.9k
1,555 results • Page
23 of 32
Recent ...
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Comment: limpa analysis advice
by
Gordon Smyth
53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
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▴ 360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
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Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
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Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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