Showing : cancer • reset
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841
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Limma and randomized block design for time-course microarray experiment
Microarray Cancer Microarray Cancer
18.5 years ago Serge Eifes ▴ 90
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2
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1.6k
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Error with arrayQuality
Microarray Cancer hexbin limma marray convert Microarray Cancer hexbin limma marray
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 50
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4
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1.7k
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Removing libraries or using a particular function
Cancer DNAcopy Cancer DNAcopy
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 1.9k
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0
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1000
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Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
18.5 years ago Aedin Culhane ▴ 510
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1
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1.4k
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer Ruuid tkWidgets graph GOstats Cancer Ruuid tkWidgets graph GOstats
updated 18.5 years ago by ▴ 10 • written 18.5 years ago by ★ 7.4k
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0
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688
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Bioconductor training at BioC2007
Cancer Cancer
18.5 years ago Seth Falcon ★ 7.4k
0
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4
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1.5k
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Sequence output formatting
Cancer Cancer
updated 18.5 years ago by ▴ 430 • written 18.5 years ago by ★ 1.9k
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0
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1.2k
views
Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
18.6 years ago Daniel Brewer ★ 1.9k
0
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1
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1.6k
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CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 18.6 years ago by ▴ 70 • written 18.6 years ago by ★ 1.9k
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1.2k
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Biomart with human genes NCBI 35
Microarray Cancer biomaRt Microarray Cancer biomaRt
18.6 years ago Steffen Durinck ▴ 580
0
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1
reply
1.5k
views
Affymetrix Human Exon Array MPS and PS files contain different probeset groups
Cancer Cancer
updated 18.6 years ago by ★ 1.0k • written 18.6 years ago by ★ 1.9k
0
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1
reply
1.7k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
18.6 years ago Steven McKinney ▴ 310
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7
replies
2.1k
views
Gene Ontology relationships
Cancer GOstats Cancer GOstats
updated 18.6 years ago by ★ 1.4k • written 18.6 years ago by ★ 7.4k
0
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1
reply
853
views
Batch sequence retrieval
Cancer annotate Cancer annotate
updated 18.6 years ago by 21k • written 18.6 years ago by ★ 1.9k
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0
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1.5k
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warning (condition has length>1) when reading in Agilent hyb text files
Cancer Cancer
18.6 years ago Seth Falcon ★ 7.4k
0
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3
replies
1.3k
views
CLF/PGF parser
Microarray Cancer affy affxparser Microarray Cancer affy affxparser
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 6.5k
0
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0
replies
1.2k
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Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
18.6 years ago lidaof ▴ 450
0
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5
replies
1.6k
views
linkage distances
Cancer Cancer
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 1.9k
0
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0
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1.0k
views
problem with hyperGTest function
GO Cancer cdf GOstats GO Cancer cdf GOstats
18.6 years ago Seth Falcon ★ 7.4k
0
votes
0
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1.3k
views
Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
18.6 years ago Seth Falcon ★ 7.4k
0
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4
replies
2.7k
views
quantile normalization of one dataset to another
Cancer Cancer
updated 18.7 years ago by ★ 1.2k • written 18.7 years ago by ★ 1.9k
0
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0
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1.2k
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Illumina BeadArray Annotation
Annotation Cancer lumiMouseV1 lumi trigger Annotation Cancer lumiMouseV1 lumi trigger
18.7 years ago Simon Lin ▴ 270
0
votes
2
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1.1k
views
Labelling subplots a), b) etc.
Cancer Cancer
updated 18.7 years ago by ▴ 100 • written 18.7 years ago by ★ 1.9k
0
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0
replies
951
views
Bioconductor installation
Cancer Cancer
18.7 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
966
views
RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 18.7 years ago by 25k • written 18.7 years ago by ▴ 110
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0
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1.0k
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Note in check report was: [Bioc-devel] Recent changes in R
Cancer annotate genefilter siggenes Cancer annotate genefilter siggenes
18.7 years ago Seth Falcon ★ 7.4k
0
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1
reply
1.6k
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 30
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0
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1.2k
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
18.7 years ago grischa tödt ▴ 30
0
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6
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2.1k
views
help in 2-color data normalization
Normalization Cancer Colon Normalization Cancer Colon
updated 18.7 years ago by ▴ 50 • written 18.7 years ago by ▴ 890
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4
replies
1.1k
views
Is a change in kit significant?
Clustering Cancer limma Clustering Cancer limma
updated 18.7 years ago by ★ 1.3k • written 18.7 years ago by ★ 1.9k
0
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6
replies
1.9k
views
install Monograph problem
Cancer widgetTools Cancer widgetTools
18.7 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
766
views
Suggestions for upgrading BioC (was: ReadAffy problem)
Cancer affyio Cancer affyio
18.7 years ago Seth Falcon ★ 7.4k
0
votes
6
replies
1.9k
views
Affy EXON Array: iterPLIER or RMA
Cancer plier Cancer plier
updated 18.7 years ago by 68k • written 18.7 years ago by ★ 1.9k
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0
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1.4k
views
LAST ANNOUNCEMENT: CSAMA'07 [COURSE]
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
18.7 years ago stefano iacus ▴ 430
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6
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1.9k
views
hyperGTest
GO Cancer GOstats Category GO Cancer GOstats Category
updated 18.7 years ago by ★ 6.0k • written 18.7 years ago by ★ 7.4k
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2
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1.1k
views
limma read.maimages for scanarray express .csv files
Cancer limma Cancer limma
18.7 years ago Seth Falcon ★ 7.4k
0
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0
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2.0k
views
GOstats: hyperGTest function
Cancer GOstats Cancer GOstats
18.7 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
858
views
Finding all combinations from groups
Cancer Cancer
updated 18.7 years ago by ▴ 730 • written 18.7 years ago by ★ 1.9k
3
votes
0
replies
4.1k
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biocLite() fails to install all limma dependencies from CRAN
Cancer limma Cancer limma
18.7 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
1.4k
views
BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.7 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
811
views
splitting a data frame
Cancer Cancer
18.7 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
718
views
GOstats hyperGTest( ): Counts of EntrezIDs returned from summary() are not same as the numbers of EntrezIDs extracted from probeSetSummary()
Microarray GO Cancer Microarray GO Cancer
18.8 years ago • updated 18.7 years ago James W. MacDonald 68k
0
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3
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1.8k
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 18.8 years ago by ▴ 870 • written 18.8 years ago by 68k
0
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5
replies
1.8k
views
homology package question
Microarray Cancer Microarray Cancer
updated 18.8 years ago by ★ 2.9k • written 18.8 years ago by 68k
0
votes
6
replies
1.3k
views
Point plot against labels and reordering
Cancer probe Cancer probe
updated 18.8 years ago by 68k • written 18.8 years ago by ★ 1.9k
0
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1
reply
1.4k
views
Biomart: Does it support IMAGE clone IDs
Microarray Cancer biomaRt Microarray Cancer biomaRt
updated 18.8 years ago by ▴ 580 • written 18.8 years ago by ★ 1.9k
0
votes
3
replies
992
views
Limma: All probes come out as significant
Cancer Biobase limma Cancer Biobase limma
updated 18.8 years ago by 21k • written 18.8 years ago by ★ 1.9k
0
votes
2
replies
1.1k
views
Limma error message
Cancer limma Cancer limma
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 2.0k
0
votes
9
replies
1.9k
views
matrix row/column displayed as a list
Cancer Cancer
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.9k
0
votes
4
replies
11k
views
Correlation matrix and pca on matrix with NA values
Cancer Cancer
updated 18.8 years ago by ▴ 510 • written 18.8 years ago by ★ 1.9k
1,555 results • Page 23 of 32
Recent ...
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Comment: limpa analysis advice by Gordon Smyth 53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
Comment: limpa analysis advice by SamGG ▴ 360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
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Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
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Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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