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cancer
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0
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0
replies
1.3k
views
Limma: doing multiple paired t-tests in one go...
Microarray
GO
Cancer
limma
Microarray
GO
Cancer
limma
18.1 years ago
Gordon Smyth
53k
0
votes
0
replies
994
views
CAMDA07 Conference at Valencia. Agenda is now available
Microarray
Cancer
Microarray
Cancer
18.2 years ago
Ana Conesa
▴ 340
0
votes
0
replies
1.0k
views
Analysis of Illumina methylation array data using beadarray
Cancer
PROcess
beadarray
Cancer
PROcess
beadarray
18.2 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
0
replies
737
views
beadarray package: problem with object made by createBeadSummaryData
Cancer
beadarray
Cancer
beadarray
18.2 years ago
Martin Morgan
25k
0
votes
1
reply
1.0k
views
Mapping Affy probes to OperonID or ensemblID
Cancer
hgu133plus2
Cancer
hgu133plus2
updated 18.2 years ago by
Sean Davis
21k • written 18.2 years ago by
Julian Lee
▴ 140
0
votes
3
replies
1.8k
views
CGH DNAcopy plot multiple samples on one plot
Cancer
DNAcopy
Cancer
DNAcopy
updated 18.2 years ago by
Gavin Kelly
▴ 50 • written 18.2 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
3.2k
views
BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
18.2 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.1k
views
made4, memory issues
Network
Clustering
Cancer
Yeast
made4
Network
Clustering
Cancer
Yeast
made4
18.2 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
2.1k
views
Median-Interquartile Normalization
Microarray
SystemsBiology
Annotation
GO
Preprocessing
Clustering
Cancer
Yeast
Organism
GO
18.2 years ago
McGee, Monnie
▴ 300
0
votes
1
reply
1.2k
views
Limma: eBayes makes p-values larger
Cancer
multtest
limma
Cancer
multtest
limma
updated 18.2 years ago by
James W. MacDonald
68k • written 18.2 years ago by
Daniel Brewer
★ 1.9k
0
votes
13
replies
2.7k
views
Is a number within a set of ranges?
Cancer
Cancer
18.2 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
726
views
Short Course in Seattle
Cancer
Cancer
18.2 years ago
rgentleman
★ 5.5k
0
votes
0
replies
1.3k
views
CAMDA 2007 Conference: EMERALD Worshop and student fellowships available. Poster submission deadline extended.
Microarray
Cancer
Microarray
Cancer
18.3 years ago
Ana Conesa
▴ 340
0
votes
2
replies
1.7k
views
RE : Limma: Normalization with large numbers ofdifferentially expressed genes
Normalization
Cancer
PROcess
Normalization
Cancer
PROcess
updated 18.3 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.3 years ago by
Serge Eifes
▴ 90
0
votes
1
reply
1.7k
views
Limma: Normalization with large numbers of differentially expressed genes
Normalization
Cancer
limma
PROcess
Normalization
Cancer
limma
PROcess
updated 18.3 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.3 years ago by
Serge Eifes
▴ 90
0
votes
1
reply
865
views
biocLite() and getBioC scripts install development packages!
Microarray
Cancer
Microarray
Cancer
updated 18.3 years ago by
Hervé Pagès
16k • written 18.3 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
711
views
biocLite() and getBioC scripts install development packages!
Microarray
Cancer
Microarray
Cancer
18.3 years ago
Martin Morgan
25k
0
votes
2
replies
1.6k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 18.3 years ago by
J-C. Marioni
▴ 40 • written 18.3 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
0
replies
1.2k
views
CAMDA07 publishing in Genomics
Microarray
Cancer
Microarray
Cancer
18.3 years ago
Ana Conesa
▴ 340
0
votes
2
replies
1.0k
views
Beadarray negative background values (bug?)
Cancer
beadarray
Cancer
beadarray
updated 18.3 years ago by
Matt Ritchie
▴ 460 • written 18.3 years ago by
Arno Velds
▴ 10
0
votes
2
replies
1.1k
views
Live linux CD with bioconductor on
Cancer
Cancer
updated 18.3 years ago by
Hervé Pagès
16k • written 18.3 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.1k
views
I would like to join the mailing list
Cancer
Cancer
updated 18.3 years ago by
Richard Pearson
▴ 390 • written 18.3 years ago by
Daniel Rico
▴ 110
0
votes
10
replies
2.4k
views
Problem with invalid GO term in HyperGResult object - NOT solved
GO
Cancer
GOstats
affycoretools
GO
Cancer
GOstats
affycoretools
updated 18.4 years ago by
Jenny Drnevich
★ 2.2k • written 18.4 years ago by
Seth Falcon
★ 7.4k
0
votes
1
reply
1.2k
views
Between array normalization for biological replicates
Microarray
Normalization
Cancer
limma
Microarray
Normalization
Cancer
limma
updated 18.4 years ago by
Wolfgang Huber
★ 13k • written 18.4 years ago by
Serge Eifes
▴ 90
0
votes
0
replies
1.3k
views
biomaRt -> XML::addNode masks graph
SystemsBiology
Cancer
graph
biomaRt
SystemsBiology
Cancer
graph
biomaRt
18.4 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
787
views
gene expression data help
Cancer
Cancer
updated 18.4 years ago by
Sean Davis
21k • written 18.4 years ago by
Srinivas Iyyer
▴ 600
0
votes
2
replies
770
views
Problematic circular design
Cancer
Cancer
updated 18.4 years ago by
James W. MacDonald
68k • written 18.4 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
744
views
hgu95a probe co-ordinates in May 2004 assembly
Cancer
hgu95a
affy
Cancer
hgu95a
affy
18.4 years ago
Janet Young
▴ 740
0
votes
0
replies
713
views
Does anyone have the same problem with new("ExpressionSet", ...) ?
Cancer
Biobase
Cancer
Biobase
18.4 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
759
views
A big change for Seth
Cancer
Cancer
18.4 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
885
views
Schedule for BioC 2.1 release
Cancer
Cancer
18.4 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.4k
views
Question about inconsistent gene expression
Microarray
Cancer
hgu133plus2
probe
affy
limma
gcrma
Microarray
Cancer
hgu133plus2
probe
updated 18.4 years ago by
Michal Okoniewski
▴ 120 • written 18.4 years ago by
Chunyan Liu
▴ 40
0
votes
0
replies
681
views
Charity Project
Cancer
Cancer
18.4 years ago
faith King
▴ 10
0
votes
0
replies
1.1k
views
package contribution DEADLINE for BioC 2.1: Aug 27
Cancer
Cancer
18.4 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.3k
views
Questions about Affymetrix E. Coli arrays
Normalization
Cancer
affy
gcrma
affyPLM
Normalization
Cancer
affy
gcrma
affyPLM
18.4 years ago
Jenny Drnevich
★ 2.2k
0
votes
0
replies
798
views
[R] trouble extracting R code from vignette using example from www.bioconductor.org
Cancer
Cancer
18.4 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
854
views
question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation
Infrastructure
Cancer
Annotation
Infrastructure
Cancer
18.4 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.6k
views
DNAcopy plot just one sample
Cancer
DNAcopy
Cancer
DNAcopy
updated 18.5 years ago by
Martin Morgan
25k • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.1k
views
Limma: Ignoring sample in differential analysis
Cancer
limma
Category
Cancer
limma
Category
updated 18.5 years ago by
Lev Soinov
▴ 470 • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
874
views
An error of affylmGUI
Cancer
Cancer
updated 18.5 years ago by
lidaof
▴ 450 • written 18.5 years ago by
Seth Falcon
★ 7.4k
0
votes
0
replies
877
views
exonmap install problem
Cancer
exonmap
Cancer
exonmap
18.5 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
879
views
Comparing limma results of two different groupings
Cancer
limma
Cancer
limma
updated 18.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
FDR of enrichment analysis and other questions on GOstats
Cancer
GOstats
GLAD
Cancer
GOstats
GLAD
18.5 years ago
Serge Eifes
▴ 90
0
votes
0
replies
1.1k
views
Distance function and gene expression standardization for clustering
Clustering
Cancer
Clustering
Cancer
18.5 years ago
Serge Eifes
▴ 90
0
votes
3
replies
897
views
Trying to convert to ExpressionSet object problems
Cancer
Cancer
updated 18.5 years ago by
Martin Morgan
25k • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
707
views
FYI: update on recent flurry of back-dated posts
Cancer
Cancer
18.5 years ago
Seth Falcon
★ 7.4k
0
votes
10
replies
2.7k
views
comparing GO lists
Annotation
GO
Cancer
graph
GOstats
Annotation
GO
Cancer
graph
GOstats
updated 18.5 years ago by
Ana Conesa
▴ 130 • written 18.5 years ago by
rgentleman
★ 5.5k
0
votes
2
replies
1.1k
views
Problems with gcrma using latest version of R and Bioconductor
Cancer
Cancer
updated 18.5 years ago by
Francois Pepin
★ 1.3k • written 18.5 years ago by
Seth Falcon
★ 7.4k
0
votes
0
replies
1.2k
views
Limma and randomized block design for time-course microarray experiment
Microarray
Cancer
limma
Microarray
Cancer
limma
18.5 years ago
Gordon Smyth
53k
0
votes
0
replies
719
views
extraction of detectable genes in illumina data.
Cancer
Cancer
18.5 years ago
Zara Ghazoui
▴ 10
1,555 results • Page
22 of 32
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Comment: Pairwise comparison of multiple groups with different base
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Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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