Bioconductor Catalyst

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427

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visua Visualization CATALYST

12 months ago elefth.pavlos ▴ 40

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854

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CATALYST

updated 16 months ago by SamGG ▴ 360 • written 2.3 years ago by David • 0

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3.0k

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CATALYST

updated 18 months ago by Hervé Pagès 16k • written 19 months ago by Hyoann ▴ 20

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599

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CATALYST

21 months ago Shaun • 0

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1.4k

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CATALYST

2.4 years ago David • 0

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1.3k

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CATALYST SingleCellExperiment

updated 4.0 years ago by helucro ▴ 70 • written 4.0 years ago by achaillon • 0

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1.6k

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CATALYST cytofWorkflow

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by Brent.OCarrigan • 0

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1.2k

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CATALYST flowCore assignPrelim Error in vapply read.FCS

5.8 years ago j.krop • 0

8 results • Page 1 of 1

Recent ...

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Comment: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

I agree that the current behavior is not fully satisfactory and, indeed, it has prevented me from using the junction read counts from featu…

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Sorry, I didn't see the added response to your original answer. I think that would be a great idea; a novel junction to annot…

Comment: Cannot install GO.db and org.Hs.eg.db by Gabriel • 0

The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Votes

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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