Bioconductor Catalyst

Showing : catalyst • reset

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458

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visua Visualization CATALYST

13 months ago elefth.pavlos ▴ 40

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892

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CATALYST

updated 18 months ago by SamGG ▴ 360 • written 2.4 years ago by David • 0

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3.1k

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CATALYST

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by Hyoann ▴ 20

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624

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CATALYST

22 months ago Shaun • 0

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1.4k

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CATALYST

2.5 years ago David • 0

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1.3k

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CATALYST SingleCellExperiment

updated 4.1 years ago by helucro ▴ 70 • written 4.1 years ago by achaillon • 0

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1.7k

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CATALYST cytofWorkflow

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by Brent.OCarrigan • 0

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1.2k

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CATALYST flowCore assignPrelim Error in vapply read.FCS

6.0 years ago j.krop • 0

8 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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