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cell calling
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4
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emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 5.1 years ago by
Aaron Lun
★ 29k • written 6.2 years ago by
C T
▴ 140
7
votes
12
replies
9.3k
views
How to identify real cells in 10X RNA-seq ?
single-cell
10X
Cell calling
DropletUtils
cellranger
updated 6.7 years ago by
Aaron Lun
★ 29k • written 6.7 years ago by
xingxd16
▴ 20
2 results • Page
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Comment: upstream git branches of bioc-release
by
Jeroen
• 0
Can we assume that each package git repo will have a `RELEASE_3_22` branch, even when they had "a build error in release"?
Comment: upstream git branches of bioc-release
by
andres.wokaty
▴ 70
The https://bioc-release.r-universe.dev should follow `RELEASE_3_22` for all packages. The packages that show `git_branch` as `devel` don'…
Comment: Input peak set for DiffBind should be all peaks or FDR filtered?
by
Millie
• 0
For DiffBind, you should use FDR-filtered peaks from MACS3 rather than all raw peaks. This ensures a high-quality, [avatar world][1] statis…
Comment: gene Set with high AUC score but no cells assigned to cell type
by
gogeni5529
• 0
THIS is spam. How Do I delete it?
Comment: limpa - drivers for unusually high standard error?
by
Julia Broadbent
• 0
Apologies for not being clearer in my initial question, but thank you for answering regardless! The large SE values I am looking at appear …
Votes
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
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