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cell calling
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4
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emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 5.2 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
C T
▴ 140
7
votes
12
replies
9.6k
views
How to identify real cells in 10X RNA-seq ?
single-cell
10X
Cell calling
DropletUtils
cellranger
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
xingxd16
▴ 20
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Comment: ATACseq rudimentary questions
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4747
• 0
Thank you so much for being detailed, all makes sense now
Answer: How to do differential expresion across time serise with edgeR?
by
Gordon Smyth
53k
You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…
Answer: ATACseq rudimentary questions
by
Kevin Blighe
★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
by
Gordon Smyth
53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
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Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
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