Showing : chippeakanno • reset
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ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
12.5 years ago Julie Zhu ★ 4.3k
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2
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ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.5 years ago by ▴ 10 • written 12.5 years ago by ★ 4.3k
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
12.6 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
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5
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1.4k
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
updated 12.7 years ago by ★ 4.3k • written 12.7 years ago by ▴ 40
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3
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Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
12.8 years ago Julie Zhu ★ 4.3k
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7
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1.9k
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Problem loading BED file with BED2RangedData
GO ChIPpeakAnno GO ChIPpeakAnno
updated 12.8 years ago by ★ 1.3k • written 12.8 years ago by ▴ 280
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ChIPpeakAnno
Annotation Category ChIPpeakAnno Annotation Category ChIPpeakAnno
12.9 years ago Julie Zhu ★ 4.3k
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3
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1.6k
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ChIPpeakAnno problem w getAllPeakSequence()
GO annotate ChIPpeakAnno GO annotate ChIPpeakAnno
updated 12.9 years ago by ★ 1.3k • written 12.9 years ago by ▴ 50
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics GO ChIPpeakAnno Genetics GO ChIPpeakAnno
13.0 years ago Julie Zhu ★ 4.3k
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3
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1.5k
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics ChIPpeakAnno Genetics ChIPpeakAnno
updated 13.0 years ago by ★ 1.3k • written 13.0 years ago by ▴ 510
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question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
13.0 years ago Julie Zhu ★ 4.3k
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3
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1.5k
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RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
13.1 years ago Julie Zhu ★ 4.3k
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4
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1.5k
views
ChIPpeakAnno
convert ChIPpeakAnno convert ChIPpeakAnno
13.1 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.4k
views
Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
13.1 years ago Julie Zhu ★ 4.3k
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0
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1.1k
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
13.1 years ago Julie Zhu ★ 4.3k
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4
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1.6k
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more question about makeVennDiagram
GO ChIPpeakAnno GO ChIPpeakAnno
13.1 years ago Julie Zhu ★ 4.3k
0
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3
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2.2k
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
updated 13.2 years ago by ★ 4.3k • written 13.2 years ago by ▴ 350
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ChIPpeakAnno - Annotation of miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
13.2 years ago Paolo Kunderfranco ▴ 350
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5
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1.8k
views
[ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9
ChIPpeakAnno ChIPpeakAnno
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 90
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1
reply
964
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ChIPPeakAnno query (overlaps)
ChIPpeakAnno ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
0
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2
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1.3k
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ChIPpeakAnno: Inquiry for Worm Analysis
Annotation GO annotate convert ChIPpeakAnno Annotation GO annotate convert ChIPpeakAnno
13.6 years ago • updated 13.5 years ago Julie Zhu ★ 4.3k
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2
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1.0k
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ChIPpeakAnno - Request of information
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
updated 13.5 years ago by ★ 1.3k • written 13.5 years ago by ★ 4.3k
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2
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1.3k
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ChIPpeakAnno findVennCounts
ChIPpeakAnno ChIPpeakAnno
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ★ 4.3k
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4
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1.6k
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question regarding ChIPPeakAnno use
ChIPpeakAnno ChIPpeakAnno
updated 13.5 years ago by ▴ 20 • written 13.5 years ago by ★ 4.3k
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1
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1.2k
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ChIPpeakAnno on pathway enrichment
Pathways GO ChIPpeakAnno Pathways GO ChIPpeakAnno
updated 13.5 years ago by ▴ 240 • written 13.5 years ago by ★ 4.3k
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610
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ChipPeakAnno question about file conversion
convert ChIPpeakAnno convert ChIPpeakAnno
13.5 years ago Julie Zhu ★ 4.3k
0
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4
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2.6k
views
ChIPpeakAnno as.data.frame error
GO AnnotationData annotate convert ChIPpeakAnno GO AnnotationData annotate convert
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 910
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2
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1.9k
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ChIPpeakAnno
GO BSgenome annotate BSgenome ChIPpeakAnno GO BSgenome annotate BSgenome ChIPpeakAnno
updated 13.6 years ago by ▴ 10 • written 13.6 years ago by ▴ 10
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3
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1.0k
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ChiPpeakAnno: findOverlappingPeaks: running time
GO ChIPpeakAnno GO ChIPpeakAnno
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ★ 13k
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1
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1.0k
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ChIPpeakAnno, makeVennDiagram
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
13.9 years ago Julie Zhu ★ 4.3k
0
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0
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902
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ChIPpeakAnno - for genes with multiple isoforms
Transcription Annotation annotate ChIPpeakAnno Transcription Annotation annotate
14.0 years ago Julie Zhu ★ 4.3k
0
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12
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3.0k
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more stupid *Ranges questions...
Transcription ChIPpeakAnno GenomicRanges Transcription ChIPpeakAnno GenomicRanges
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ★ 4.2k
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1.0k
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[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch problems in R2.13/ChIPpeakAnno_1.8.0 and R2.13/ChIPpeakAnno_2.0.2
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
14.1 years ago • updated 14.0 years ago Julie Zhu ★ 4.3k
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2
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1.9k
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ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
14.1 years ago Julie Zhu ★ 4.3k
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3
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1.6k
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chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO
Annotation convert biomaRt bridge ChIPpeakAnno Annotation convert biomaRt bridge
updated 14.1 years ago by ▴ 810 • written 14.1 years ago by ★ 4.3k
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1
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1.2k
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Regarding ChIPpeakAnno::getEnrichedGO function
GO ChIPpeakAnno GO ChIPpeakAnno
updated 14.2 years ago by ▴ 20 • written 14.2 years ago by ★ 4.3k
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1.1k
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ChIPpeakAnno package - filter annotatedPeak for GO enrichment analysis
ChIPSeq Annotation GO biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation GO biomaRt chipseq
14.2 years ago Julie Zhu ★ 4.3k
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2
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1.5k
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Hypergeometric test in ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 14.2 years ago by ▴ 20 • written 14.2 years ago by ★ 4.3k
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1.1k
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Information needed for ChIPpeakAnno package
annotate ChIPpeakAnno annotate ChIPpeakAnno
14.2 years ago Julie Zhu ★ 4.3k
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0
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884
views
choice of biomaRt feature from annotatePeakInBatch
ChIPSeq Annotation biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation biomaRt chipseq
14.3 years ago Julie Zhu ★ 4.3k
0
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0
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904
views
ChIPpeakAnno
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
14.3 years ago Julie Zhu ★ 4.3k
0
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1
reply
813
views
IRanges question!
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
updated 14.3 years ago by ★ 11k • written 14.3 years ago by ▴ 290
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0
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970
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4-way venn diagram with ChIPpeakAnno
ChIPpeakAnno ChIPpeakAnno
14.3 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.1k
views
Create an non-mainstream organism-specific database for ChIP-chip analysis
Organism ChIPpeakAnno Organism ChIPpeakAnno
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 40
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1.5k
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Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.4 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.4k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 14.5 years ago by ★ 8.2k • written 14.5 years ago by ▴ 120
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1.3k
views
[ENQUIRY] chIPpeakAnno annotatePeakInBatch
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
14.5 years ago Julie Zhu ★ 4.3k
0
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3
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1.3k
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Help on ChIPpeakAnno
probe ChIPpeakAnno probe ChIPpeakAnno
14.5 years ago Prashantha Hebbar ▴ 260
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0
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1.3k
views
Call for help about your Chippeakanno R package
Annotation Cancer AnnotationData ChIPpeakAnno Annotation Cancer AnnotationData ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
179 results • Page 3 of 4
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Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexecutor4 • 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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