Showing : chippeakanno • reset
22
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10
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8.5k
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Error in GRanges: could not find symbol "recursive" in environment of the generic function
granges chippeakanno
updated 9.0 years ago by ▴ 10 • written 9.0 years ago by ▴ 80
2
votes
3
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2.1k
views
ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
chippeakanno overlappingpeaks annotation
updated 9.2 years ago by ★ 1.4k • written 9.2 years ago by • 0
2
votes
7
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3.7k
views
ChIPpeakAnno-problem exporting data due to "arguments imply differing number of rows"
chippeakanno
updated 9.2 years ago by ★ 4.3k • written 9.2 years ago by • 0
3
votes
5
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4.5k
views
Error with ChIPpeakAnno Ensembl annotation
ChIPpeakAnno genomicfeatures
updated 9.3 years ago by ★ 4.3k • written 9.3 years ago by ▴ 370
0
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1
reply
1.3k
views
Discordant results in finding overlaps for three peak data with ChIPpeakAnno
ChIPpeakAnno
9.6 years ago moyitasha • 0
5
votes
15
replies
4.8k
views
nearest genes using TxDb.Hsapiens.UCSC.hg19
txdb.hsapiens.ucsc.hg19.knowngene ChIPpeakAnno
updated 9.7 years ago by ★ 4.3k • written 9.7 years ago by ▴ 140
0
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1
reply
1.3k
views
Error with findOverlapsOfPeaks
ChIPpeakAnno
9.9 years ago alex.tamburino • 0
0
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3
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2.0k
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CHiPpeakAnno GO and/or KEGG results presenting
chippeakanno go kegg graphics
9.9 years ago lokapal • 0
0
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2
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2.7k
views
Help with toGRanges
granges chippeakanno
updated 9.9 years ago by ★ 1.6k • written 9.9 years ago by • 0
0
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0
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1.8k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation chippeakanno rattus norvegicus medip-seq
10.0 years ago Vang Le ▴ 80
2
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4
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2.3k
views
ChIPpeakAnno annotatePeakInBatch output
chippeakanno
10.1 years ago igor ▴ 50
4
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5
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2.4k
views
ChIPpeakAnno getAnnotation request fail
chippeakanno biomart ensembl
10.1 years ago igor ▴ 50
0
votes
2
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2.5k
views
Problems installing ChipPeakAnno with newest version of R and Bioconductor
chippeakanno installation
10.3 years ago rebecca.halbach • 0
0
votes
3
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1.8k
views
ChIPpeakAnno (makeVennDiagram) giving different results than before
chippeakanno venn diagram
updated 10.3 years ago by ★ 1.4k • written 10.3 years ago by • 0
1
vote
1
reply
2.5k
views
ChIP-seq, peak annotation using ChIPpeakAnno
chipseq chippeakanno
updated 10.3 years ago by ★ 1.4k • written 10.3 years ago by • 0
0
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0
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1.6k
views
Different amount of overlapping Peaks in ChIPpeakAnno-Package
chippeakanno findoverlaps venn diagram
10.3 years ago N. F. • 0
0
votes
0
replies
1.2k
views
No genes' ID in peak annotations during ChiP-Seq with ChIPpeakAnno R package
chippeakanno chipseq annotation
10.4 years ago MarcinKosiński • 0
1
vote
9
replies
4.9k
views
ChIPpeakAnno: findOverlapsOfPeaks keep GRanges metadata
chippeakanno findOverlapsOfPeaks
updated 10.8 years ago by ▴ 240 • written 10.8 years ago by ▴ 30
0
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1
reply
2.6k
views
Scaled venn/euler diagram using makeVennDiagram
ChIPpeakAnno venn diagram
updated 10.8 years ago by ★ 1.4k • written 10.8 years ago by ▴ 30
0
votes
2
replies
2.1k
views
News: ChIPpeakAnno::getAnnotation get Exons
chippeakanno News
updated 10.9 years ago by ★ 1.4k • written 11.0 years ago by ★ 4.3k
0
votes
1
reply
2.0k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ▴ 10
0
votes
5
replies
1.8k
views
Get ChIPpeakAnno to report total number of covered bases in VennDiagrams instead of (or in addition to) regions
chippeakanno
updated 11.1 years ago by ★ 1.4k • written 11.1 years ago by ▴ 20
1
vote
2
replies
2.5k
views
ChipPeakAnno:getAnnotation using UCSC instead of ensembl
annotation chippeakanno
updated 11.1 years ago by ★ 1.4k • written 11.1 years ago by • 0
2
votes
1
reply
1.7k
views
ChIPpeakAnno: Non-empty IRange object in case of no overlap
chippeakanno iranges
updated 11.2 years ago by ★ 4.3k • written 11.2 years ago by ▴ 30
4
votes
12
replies
3.7k
views
Curious behaviour of ChIPpeakAnno
chippeakanno
updated 11.3 years ago by ★ 1.4k • written 11.3 years ago by ▴ 20
0
votes
3
replies
1.9k
views
generate RangedData from DiffBind
chippeakanno diffbind
11.3 years ago joydeepbhadury • 0
0
votes
0
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3.0k
views
DiffBind annotation
Annotation ChIPpeakAnno DiffBind chipenrich
11.5 years ago Rory Stark ★ 5.3k
0
votes
3
replies
1.4k
views
ChIPpeakAnno 2.12.2 bug
ChIPpeakAnno ChIPpeakAnno
updated 11.5 years ago by ★ 1.4k • written 11.6 years ago by ★ 4.3k
0
votes
1
reply
2.1k
views
ChIPpeakAnno: Maxgap option in annotatePeakInBatch
Lung AnnotationData ChIPpeakAnno Lung AnnotationData ChIPpeakAnno
11.6 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.2k
views
ChIPpeakAnno for overlapping gene features
GO ChIPpeakAnno GO ChIPpeakAnno
updated 11.6 years ago by ▴ 10 • written 11.6 years ago by ★ 4.3k
0
votes
4
replies
1.6k
views
Suggestion for a small change to ChIPpeakAnno
ChIPpeakAnno ChIPpeakAnno
11.7 years ago • updated 11.6 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.0k
views
ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 350
0
votes
2
replies
1.9k
views
About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 330
0
votes
0
replies
1.2k
views
About ChIPpeakAnno output = "shortestDistance"
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
11.9 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.5k
views
About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ▴ 330
0
votes
0
replies
1.7k
views
ChIPpeakAnno: 6-way venn diagram
RNASeq ChIPpeakAnno RNASeq ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
2.7k
views
ChIPpeakAnno: TSS at - strand
Annotation convert ChIPpeakAnno Annotation convert ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
0
votes
5
replies
2.0k
views
Query on ChipPeakAnno: AnnotatePeakinBatch input
Annotation Cancer ChIPpeakAnno Annotation Cancer ChIPpeakAnno
updated 12.2 years ago by ▴ 30 • written 12.2 years ago by ★ 4.3k
0
votes
0
replies
1.3k
views
ChIPpeakAnno Question, regarding BED scores
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
12.4 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.6k
views
ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 12.4 years ago by ★ 4.3k • written 12.4 years ago by ▴ 10
0
votes
1
reply
1.7k
views
ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 12.4 years ago by ★ 4.3k • written 12.4 years ago by ★ 13k
0
votes
0
replies
1.2k
views
some question about how to use the ChIPpeakAnno.
ChIPpeakAnno ChIPpeakAnno
12.5 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.1k
views
question on ChIPpeakAnno::getEnrichedGO
GO ChIPpeakAnno GO ChIPpeakAnno
12.5 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
2.0k
views
TranscriptDb object to RangedData for ChIPpeakAnno
Annotation GO AnnotationData Organism BSgenome TranscriptDb convert BSgenome ChIPpeakAnno
12.6 years ago Alan Smith ▴ 150
0
votes
0
replies
1.3k
views
Venn diagrams using ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.7k
views
ChIPpeakAnno
ChIPpeakAnno ASSIGN ChIPpeakAnno ASSIGN
12.7 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.8k
views
ChIPpeakAnno makeVennDiagram problems
GO BSgenome BSgenome ChIPpeakAnno GO BSgenome BSgenome ChIPpeakAnno
updated 12.8 years ago by ★ 4.3k • written 12.8 years ago by ▴ 160
0
votes
0
replies
1.2k
views
ChIPpeakAnno
Lung convert ChIPpeakAnno Lung convert ChIPpeakAnno
12.8 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.3k
views
RE : ChIPpeakAnno_2.8.0 assignCromosomeRegion
annotate Category ChIPpeakAnno annotate Category ChIPpeakAnno
12.8 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
894
views
Problem with ChIPpeakAnno - assignChromosomeRegion
ChIPpeakAnno ChIPpeakAnno
12.9 years ago Julie Zhu ★ 4.3k
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Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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