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chromatin
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2.0k
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extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 7.2 years ago by
Aaron Lun
★ 29k • written 7.2 years ago by
gryderart
• 0
0
votes
0
replies
1.5k
views
Job:
Postdoctoral position - Molecular Biologist
epigenomics
RNA methylation
RNA dynamics
chromatin
computational biology
Job
7.8 years ago
mattia pelizzola
▴ 200
1
vote
4
replies
2.7k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 7.9 years ago by
Gord Brown
▴ 670 • written 8.0 years ago by
tgjohnst
• 0
5
votes
7
replies
5.6k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
8.6 years ago
BioinfGuru
▴ 70
0
votes
0
replies
2.1k
views
Job:
Harvard Medical School: Postdoctoral Research Associate position
Genomic Assays
Chromatin
Computational Biology
Job
11.0 years ago
Doe, Aimee
▴ 40
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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