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clariom
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
2.8 years ago
agamemnon
• 0
1
vote
5
replies
1.8k
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Correct annotation R package for human clariom array analysis
clariom
oligo
affycoretools
pd.hugene.2.0.st
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
svlachavas
▴ 840
1
vote
3
replies
1.3k
views
Selecting probe data from Clariom D assays using the fid probe tags
clariom
pd.clariom.d.human
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
AliStair Rust
• 0
1
vote
1
reply
1.5k
views
RNA degradation plot for Clariom S and Clariom D
Rna degradation
Clariom
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
kritikamish99
▴ 10
2
votes
4
replies
2.9k
views
affycoretools annotateEset problem using Clariom D arrays
affycoretools
clariom
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
willj
▴ 30
2
votes
2
replies
1.4k
views
paCalls with Clariom Chips
oligo
microarray
clariom
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
kmvaldez2
• 0
0
votes
0
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1.1k
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genefu and clariom d
clariom
genefu
8.4 years ago
info
• 0
7 results • Page
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Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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