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clariom
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
14 months ago
jsharif
• 0
1
vote
5
replies
1.2k
views
Correct annotation R package for human clariom array analysis
clariom
oligo
affycoretools
pd.hugene.2.0.st
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
svlachavas
▴ 830
1
vote
3
replies
853
views
Selecting probe data from Clariom D assays using the fid probe tags
clariom
pd.clariom.d.human
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
AliStair Rust
• 0
1
vote
1
reply
980
views
RNA degradation plot for Clariom S and Clariom D
Rna degradation
Clariom
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
kritikamish99
▴ 10
2
votes
4
replies
2.2k
views
affycoretools annotateEset problem using Clariom D arrays
affycoretools
clariom
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
willj
▴ 30
2
votes
2
replies
1.0k
views
paCalls with Clariom Chips
oligo
microarray
clariom
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
kmvaldez2
• 0
0
votes
0
replies
785
views
genefu and clariom d
clariom
genefu
6.8 years ago
info
• 0
7 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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