Showing : classification • reset
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where to start?
Classification Clustering Category Classification Clustering Category
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 40
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6
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1.6k
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ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 7.4k
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5
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3.1k
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DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 11.1 years ago by 41k • written 11.2 years ago by ★ 13k
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2
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1.3k
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feature selection
Classification Classification
updated 21.1 years ago by ▴ 360 • written 21.1 years ago by ▴ 20
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2
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1.2k
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Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 20.0 years ago by ★ 1.0k • written 20.0 years ago by ▴ 180
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3
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990
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
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3
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1.1k
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Classification limma bridge Bayesian Classification limma bridge
19.8 years ago Gordon Smyth 50k
0
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2
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1.7k
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Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 15.7 years ago by ▴ 750 • written 15.7 years ago by ▴ 300
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3
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1.0k
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Generating random gene lists: does sample/resample generate random sets
Classification Classification
15.7 years ago Scott Ochsner ▴ 300
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2
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1.4k
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Problems with Affy names / BGA
Classification affy made4 Classification affy made4
updated 17.4 years ago by ▴ 510 • written 17.5 years ago by ▴ 310
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1
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869
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please fix link error in your bioconductor site
Microarray Classification Microarray Classification
updated 21.8 years ago by ★ 3.9k • written 21.8 years ago by ▴ 10
3
votes
2
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1.1k
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Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 5.6 years ago by 41k • written 5.6 years ago by • 0
0
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3
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2.9k
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PAMR- Package: Workflow and/or other methods
Classification Classification
updated 11.5 years ago by 21k • written 11.5 years ago by ▴ 70
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1
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1.5k
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Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 14.3 years ago by ★ 13k • written 14.3 years ago by 21k
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3
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1.6k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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2
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913
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RLMM questions
GO Classification cdf affy RLMM GO Classification cdf affy RLMM
updated 17.7 years ago by ★ 2.4k • written 17.7 years ago by ▴ 20
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1
reply
1.1k
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
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1
reply
1.5k
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Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
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3
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1.5k
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MLSeq Mathematical Concepts
Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ★ 1.5k
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2
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1.1k
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OT: van 't Veer (2002) classifier
Classification Cancer Breast Classification Cancer Breast
updated 14.7 years ago by ★ 1.3k • written 14.7 years ago by ▴ 110
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3
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1.5k
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Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification CMA Classification CMA
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
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2
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1.1k
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Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification Classification
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
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1
reply
935
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Diagonal LDA in MLInterfaces
Classification Classification
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 90
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2
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1.5k
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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.5 years ago by ★ 13k • written 8.6 years ago by ▴ 830
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1
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2.2k
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edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 10
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1
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1.1k
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classification method applied to microarrays (CMA package)
Classification CMA Classification CMA
updated 14.5 years ago by ▴ 10 • written 14.5 years ago by ▴ 190
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1
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1.2k
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Sample size estimation for independent validation set
Microarray Classification PROcess Microarray Classification PROcess
updated 14.4 years ago by ▴ 110 • written 14.4 years ago by ▴ 10
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1
reply
684
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decideTests with nestedF
Classification Classification
18.8 years ago Lei Jiang ▴ 20
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4
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1.6k
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RandomForest, supervised machine learning and uncertainty
GO Classification GO Classification
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 370
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1
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1.1k
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Classification with large number of qualitative variables
R classification qualitative variables high dimensionnal
updated 7.4 years ago by ▴ 130 • written 7.4 years ago by • 0
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5
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4.5k
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probability of a point membership to a certain cluster
Classification Classification
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 60
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3
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3.0k
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Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 300
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0
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985
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Classification Society Annual Meeting
Classification Classification
16.2 years ago William Shannon ▴ 280
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0
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1.1k
views
Cluster and classification research ggrad students
Classification Classification
15.7 years ago William Shannon ▴ 280
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0
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1.5k
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Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
15.5 years ago Renaud Gaujoux ▴ 170
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CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
15.2 years ago Renaud Gaujoux ▴ 170
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1.3k
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Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
14.5 years ago Reek, J. ▴ 10
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720
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转发： 回复： Patent issues of classification algorithms
Microarray Classification Cancer Microarray Classification Cancer
14.4 years ago Martin Morgan 25k
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1.0k
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回复： 回复： : Patent issues of classification algorithms
Microarray Classification Microarray Classification
14.4 years ago qinghua xu ▴ 110
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0
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1.2k
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Statistical approach to compare differentiall expressed gene lists
Microarray Classification Microarray Classification
14.4 years ago qinghua xu ▴ 110
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0
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1.2k
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compare function in CMA package
Classification CMA Classification CMA
14.3 years ago Javier Pérez Florido ▴ 840
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0
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1.5k
views
R Course 28-29 March in Heidelberg (EMBL)
Classification Classification
14.3 years ago Wolfgang Huber ★ 13k
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0
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17k
views
1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.9 years ago David Lyon ▴ 340
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0
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883
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Fwd: question regarding to MLInterface
Network Classification Network Classification
13.5 years ago Vincent J. Carey, Jr. 6.7k
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2.4k
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'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray Classification limma CMA Microarray Classification limma CMA
13.2 years ago Santosh Patnaik ▴ 30
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0
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741
views
Question about MCRestimate
Classification Classification
11.9 years ago ZHENG FU ▴ 10
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0
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1.4k
views
Overlapping ROC plots
Classification ROC graph Classification ROC graph
11.9 years ago Yadav Sapkota ▴ 130
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0
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953
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Questions regarding MCRestimate package
Classification MCRestimate Classification MCRestimate
11.8 years ago Guest User ★ 13k
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0
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1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
11.1 years ago CAMDA 2013 ▴ 30
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0
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1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
11.0 years ago CAMDA 2013 ▴ 30
50 results • Page 1 of 1
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Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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