Bioconductor ClusterProfiler

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144

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clusterProfiler OrgDb biomaRt Zea_mays

updated 7 days ago by James W. MacDonald 65k • written 7 days ago by sansan • 0

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113

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clusterProfiler GeneSetEnrichment

10 days ago Ana • 0

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 3 days ago by James W. MacDonald 65k • written 3 days ago by fernanda.backsouza ▴ 10

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164

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clusterProfiler ggpubr

updated 18 days ago by James W. MacDonald 65k • written 18 days ago by BCS12 • 0

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170

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Pathways clusterProfiler gseKEGG KEGG

14 days ago • updated 13 days ago julia_mcdonough • 0

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134

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clusterProfiler gseKEGG

21 days ago andromeda • 0

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137

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DOSE enrichplot clusterProfiler

updated 12 days ago by Guido Hooiveld ★ 3.9k • written 16 days ago by Lucie • 0

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817

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clusterProfiler RNASeq

updated 2 days ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

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279

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clusterProfiler GenomicDistributionsData KEGG

5 days ago • updated 1 day ago fernanda.backsouza ▴ 10

9 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

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Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length