Bioconductor Co-expression network

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WGCNA rnaseq gene expression co-expression network

updated 6.9 years ago by Peter Langfelder ★ 3.0k • written 6.9 years ago by davidjameswheatcroft ▴ 10

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wgcna picksoftthreshold scale-free topology co-expression network

7.0 years ago marcantoine.guery • 0

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LRT co-expression network deseq2 time course experiment network analysis

updated 22 months ago by Jennifer Dehner • 0 • written 7.0 years ago by aishu.jp ▴ 30

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WGCNA co-expression network RNA-Seq

7.1 years ago wangdp123 • 0

4 results • Page 1 of 1

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Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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