Bioconductor Coldata

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220

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DESeq2 design coldata

updated 3 days ago by swbarnes2 ★ 1.3k • written 4 days ago by arfranco ▴ 130

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560

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ColData pheatmap DESeq2

written 10 months ago by dania.khalid • 0

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1.0k

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SingleCellExperiment colData rename

updated 14 months ago by Basti ▴ 780 • written 14 months ago by achoppe ▴ 10

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579

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BiSeq Coldata

3.9 years ago akhaira • 0

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1.4k

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deseq2 levels factor colData

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by ariel ▴ 20

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42k

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deseq2 coldata

updated 5.5 years ago by swbarnes2 ★ 1.3k • written 5.5 years ago by mjrarcher ▴ 10

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3.1k

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variantannotation coldata

updated 5.6 years ago by Valerie Obenchain ★ 6.8k • written 5.6 years ago by lvclark ▴ 10

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3.5k

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deseq2 coldata NA

updated 5.7 years ago by Michael Love 42k • written 5.8 years ago by t.kuilman ▴ 170

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1.5k

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multiassayexperiment colData

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.4 years ago by Lluís Revilla Sancho ▴ 730

9 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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