Bioconductor BiSeq

Showing : BiSeq • reset

votes

518

views

BiSeq

22 months ago thomas.koefoed • 0

votes

replies

614

views

Biseq Methylation DMP DMR RRBS

3.4 years ago i.s.castanho • 0

votes

760

views

bedgraph .cov wig biseq coverage

3.4 years ago akhaira • 0

votes

625

views

BiSeq testClusters error dmr

3.4 years ago akhaira • 0

votes

replies

765

views

biseq beta regression

3.4 years ago akhaira • 0

votes

replies

393

views

Biseq

3.4 years ago akhaira • 0

votes

replies

895

views

BiSeq DMR

updated 3.5 years ago by James W. MacDonald 64k • written 3.5 years ago by akhaira • 0

vote

replies

489

views

BiSeq Coldata

3.5 years ago akhaira • 0

votes

513

views

biseq R methylation

3.6 years ago AishaD • 0

votes

500

views

biseq betaRegression RRBS Methylation

3.7 years ago i.s.castanho • 0

votes

replies

645

views

BiSeq Wald test Beta regression

4.8 years ago mira • 0

votes

766

views

biseq package installation r

updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by lwh863 • 0

votes

replies

810

views

biseq ccle

5.3 years ago spr ▴ 10

votes

952

views

dna methylation biseq

updated 5.9 years ago by Gordon Smyth 48k • written 5.9 years ago by ahmad.moousavi • 0

votes

1.0k

views

biseq RRBS betaregression

6.7 years ago l.eijssen • 0

votes

replies

1.1k

views

biseq methylation dmr analysis

updated 6.9 years ago by Katja Hebestreit ▴ 130 • written 6.9 years ago by jjalmagro • 0

votes

replies

1.7k

views

biseq error trimClusters

updated 7.8 years ago by Katja Hebestreit ▴ 130 • written 7.9 years ago by kms68 • 0

vote

replies

1.5k

views

methylation linear model dmr bsseq biseq

8.0 years ago enricoferrero ▴ 660

votes

replies

1.7k

views

BiSeq readBismark

updated 8.1 years ago by James W. MacDonald 64k • written 8.1 years ago by Neel Aluru ▴ 460

vote

replies

2.4k

views

dmr methylation deseq2 bsseq biseq

updated 8.1 years ago by Kasper Daniel Hansen 6.5k • written 8.1 years ago by enricoferrero ▴ 660

votes

replies

2.7k

views

biseq fdr data results

8.6 years ago • updated 8.5 years ago mnaymik ▴ 10

votes

replies

1.8k

views

biseq RRBS SAAP-BS coverage

8.6 years ago maria.maqueda • 0

votes

replies

1.6k

views

BiSeq BiSeq

updated 9.8 years ago by David Iles ▴ 130 • written 9.8 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

Replies

Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k