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NA
•
reset
2
votes
1
reply
364
views
Removing metadata rows containing NA values in GRanges
IRanges
GRanges
NA
updated 4 months ago by
ATpoint
★ 2.1k • written 4 months ago by
Timucin
• 0
0
votes
1
reply
632
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 14 months ago by
ATpoint
★ 2.1k • written 14 months ago by
Johan Largo
• 0
0
votes
1
reply
394
views
using qCount from the QuasR package
qCount
QuasR
NA
updated 2.5 years ago by
Michael Stadler
▴ 350 • written 2.5 years ago by
jabbar_campbell
• 0
2
votes
5
replies
2.5k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma
mass spec
na
updated 3.9 years ago by
Gordon Smyth
47k • written 3.9 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
789
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 4.3 years ago by
altuna akalin
▴ 20 • written 4.3 years ago by
GFM
▴ 20
0
votes
6
replies
2.6k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 4.5 years ago by
Michael Love
39k • written 4.5 years ago by
t.kuilman
170
0
votes
1
reply
1.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 4.9 years ago by
Gordon Smyth
47k • written 4.9 years ago by
belmore
• 0
0
votes
0
replies
603
views
Inconsistent Missing Values When Importing GFF3
rtracklayer
NA
6.4 years ago
Dario Strbenac
★ 1.5k
2
votes
4
replies
877
views
ResrtingTools include pvalue NA
reportingtools
deseq2
NA
pvalue
updated 6.6 years ago by
Michael Love
39k • written 6.6 years ago by
NMostajo
▴ 10
0
votes
3
replies
4.2k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2
NA
cooksCutoff
updated 6.9 years ago by
Michael Love
39k • written 6.9 years ago by
colaneri
▴ 30
2
votes
1
reply
1.4k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools
lrr
baf
NA
updated 7.2 years ago by
Stephanie M. Gogarten
▴ 820 • written 7.2 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
3
replies
1.1k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
7.2 years ago
Dimitris Polychronopoulos
▴ 80
0
votes
1
reply
1.2k
views
Plotting confidence intervals with NA values
graphics
confidence interval
NA
updated 7.3 years ago by
James W. MacDonald
62k • written 7.3 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
2
replies
1.4k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz
Plot
NA
graph
Job
updated 7.5 years ago by
James W. MacDonald
62k • written 7.5 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.3k
views
missing values in data as input for parody package
parody
r
NA
7.9 years ago
upendrakumar.devisetty
• 0
1
vote
2
replies
1.3k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats
BioConductor
LD
Linkage Disequilibrium
NA
8.0 years ago
remi.tournebize
▴ 10
3
votes
6
replies
2.0k
views
Possible bug in DEseq2 1.6.1 ?
deseq2
cook
NA
updated 8.3 years ago by
Michael Love
39k • written 8.3 years ago by
skiaphrene
• 0
12
votes
13
replies
6.5k
views
EdgeR Differential Expression analysis with NAs
EdgeR
rnaseq
NA
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
elliott77
• 0
18 results • Page
1 of 1
Recent ...
Replies
Comment: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
• 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
• 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2
by
Basti
▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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