Biostar NA

Showing : NA • reset

votes

364

views

IRanges GRanges NA

updated 4 months ago by ATpoint ★ 2.1k • written 4 months ago by Timucin • 0

votes

632

views

pvalue NA R DESeq2

updated 14 months ago by ATpoint ★ 2.1k • written 14 months ago by Johan Largo • 0

votes

394

views

qCount QuasR NA

updated 2.5 years ago by Michael Stadler ▴ 350 • written 2.5 years ago by jabbar_campbell • 0

votes

replies

2.5k

views

limma mass spec na

updated 3.9 years ago by Gordon Smyth 47k • written 3.9 years ago by reubenmcgregor88 • 0

votes

replies

789

views

methylkit normalizecoverage NA

updated 4.3 years ago by altuna akalin ▴ 20 • written 4.3 years ago by GFM ▴ 20

votes

replies

2.6k

views

deseq2 coldata NA

updated 4.5 years ago by Michael Love 39k • written 4.5 years ago by t.kuilman 170

votes

1.5k

views

edger dgelist NA egsea

updated 4.9 years ago by Gordon Smyth 47k • written 4.9 years ago by belmore • 0

votes

replies

603

views

rtracklayer NA

6.4 years ago Dario Strbenac ★ 1.5k

votes

replies

877

views

reportingtools deseq2 NA pvalue

updated 6.6 years ago by Michael Love 39k • written 6.6 years ago by NMostajo ▴ 10

votes

replies

4.2k

views

deseq2 NA cooksCutoff

updated 6.9 years ago by Michael Love 39k • written 6.9 years ago by colaneri ▴ 30

votes

1.4k

views

gwastools lrr baf NA

updated 7.2 years ago by Stephanie M. Gogarten ▴ 820 • written 7.2 years ago by Vinicius Henrique da Silva ▴ 40

vote

replies

1.1k

views

rtracklayer NA BED getseq

7.2 years ago Dimitris Polychronopoulos ▴ 80

votes

1.2k

views

graphics confidence interval NA

updated 7.3 years ago by James W. MacDonald 62k • written 7.3 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.4k

views

Gviz Plot NA graph Job

updated 7.5 years ago by James W. MacDonald 62k • written 7.5 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.3k

views

parody r NA

7.9 years ago upendrakumar.devisetty • 0

vote

replies

1.3k

views

snpStats BioConductor LD Linkage Disequilibrium NA

8.0 years ago remi.tournebize ▴ 10

votes

replies

2.0k

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deseq2 cook NA

updated 8.3 years ago by Michael Love 39k • written 8.3 years ago by skiaphrene • 0

votes

replies

6.5k

views

EdgeR rnaseq NA

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by elliott77 • 0

18 results • Page 1 of 1

Recent ...

Replies

Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k