Biostar NA

Showing : NA • reset

votes

151

views

pvalue NA R DESeq2

updated 7 weeks ago by ATpoint ▴ 970 • written 7 weeks ago by Johan Largo • 0

votes

211

views

qCount QuasR NA

updated 17 months ago by Michael Stadler ▴ 350 • written 18 months ago by jabbar_campbell • 0

votes

replies

1.5k

views

limma mass spec na

updated 2.9 years ago by Gordon Smyth 44k • written 2.9 years ago by reubenmcgregor88 • 0

votes

replies

519

views

methylkit normalizecoverage NA

updated 3.2 years ago by altuna akalin ▴ 20 • written 3.2 years ago by GFM ▴ 20

votes

replies

1.6k

views

deseq2 coldata NA

updated 3.4 years ago by Michael Love 35k • written 3.5 years ago by t.kuilman 170

votes

1.1k

views

edger dgelist NA egsea

updated 3.9 years ago by Gordon Smyth 44k • written 3.9 years ago by belmore • 0

votes

replies

508

views

rtracklayer NA

5.3 years ago Dario Strbenac ★ 1.5k

votes

replies

731

views

reportingtools deseq2 NA pvalue

updated 5.6 years ago by Michael Love 35k • written 5.6 years ago by NMostajo ▴ 10

votes

replies

3.8k

views

deseq2 NA cooksCutoff

updated 5.8 years ago by Michael Love 35k • written 5.8 years ago by colaneri ▴ 30

votes

1.1k

views

gwastools lrr baf NA

updated 6.2 years ago by Stephanie M. Gogarten ▴ 820 • written 6.2 years ago by Vinicius Henrique da Silva ▴ 40

vote

replies

901

views

rtracklayer NA BED getseq

6.2 years ago Dimitris Polychronopoulos ▴ 70

votes

998

views

graphics confidence interval NA

updated 6.3 years ago by James W. MacDonald 58k • written 6.3 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.2k

views

Gviz Plot NA graph Job

updated 6.5 years ago by James W. MacDonald 58k • written 6.5 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.2k

views

parody r NA

6.8 years ago upendrakumar.devisetty • 0

vote

replies

1.1k

views

snpStats BioConductor LD Linkage Disequilibrium NA

6.9 years ago remi.tournebize ▴ 10

votes

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1.8k

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deseq2 cook NA

updated 7.2 years ago by Michael Love 35k • written 7.2 years ago by skiaphrene • 0

votes

replies

5.6k

views

EdgeR rnaseq NA

updated 7.3 years ago by Aaron Lun ★ 27k • written 7.3 years ago by elliott77 • 0

17 results • Page 1 of 1

Recent ...

Replies

Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of by Michael Love 35k

I'm guessing this data does not conform well to the assumptions of the rlog, which are that variation is distributed a certain way from exp…

Answer: Affymetrix chip which is not listed on this webpage by James W. MacDonald 58k

You can't use the `affy` package for Clariom S arrays, but instead have to use the `oligo` package. I don't believe `affylmGUI` uses `oligo…

Comment: deseq2 + filtering low counts with noiseq function by Michael Love 35k

Nothing especially concerning about nonparametric methods in my opinion, except that with very low sample size they lose sensitivity. E.g. …

Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6 by Rory Stark ★ 4.3k

I've checked in a fix that should handle this warning condition, it is active in the currently downloadable version if you do a `BiocManage…

Answer: How to get all possible comparisons in DiffBind by Rory Stark ★ 4.3k

Note that contrasts are handled differently since `DiffBind_3.0`. You can still calculate results for multiple contrasts simultaneously, bu…

Votes

A: How to get all possible comparisons in DiffBind

Answer: Limma prametrization

Comment: Limma prametrization

A: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom

Answer: Unable to GetGRangesFromEnsDb

Awards • All

Teacher to Rory Stark ★ 4.3k

Prophet to nabiyogesh • 0