Biostar NA

Showing : NA • reset

votes

136

views

qCount QuasR NA

updated 12 months ago by Michael Stadler ▴ 340 • written 12 months ago by jabbar_campbell • 0

votes

replies

1.1k

views

limma mass spec na

updated 2.4 years ago by Gordon Smyth 43k • written 2.4 years ago by reubenmcgregor88 • 0

votes

replies

363

views

methylkit normalizecoverage NA

updated 2.8 years ago by altuna akalin ▴ 20 • written 2.8 years ago by GFM ▴ 20

votes

replies

1.3k

views

deseq2 coldata NA

updated 3.0 years ago by Michael Love 33k • written 3.0 years ago by t.kuilman 170

votes

915

views

edger dgelist NA egsea

updated 3.4 years ago by Gordon Smyth 43k • written 3.4 years ago by belmore • 0

votes

replies

467

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rtracklayer NA

4.9 years ago Dario Strbenac ★ 1.5k

votes

replies

663

views

reportingtools deseq2 NA pvalue

updated 5.1 years ago by Michael Love 33k • written 5.1 years ago by NMostajo ▴ 10

votes

replies

3.6k

views

deseq2 NA cooksCutoff

updated 5.3 years ago by Michael Love 33k • written 5.3 years ago by colaneri ▴ 30

votes

1.0k

views

gwastools lrr baf NA

updated 5.7 years ago by Stephanie M. Gogarten ▴ 800 • written 5.7 years ago by Vinicius Henrique da Silva ▴ 40

vote

replies

834

views

rtracklayer NA BED getseq

5.7 years ago Dimitris Polychronopoulos ▴ 70

votes

915

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graphics confidence interval NA

updated 5.8 years ago by James W. MacDonald 57k • written 5.8 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.1k

views

Gviz Plot NA graph Job

updated 6.0 years ago by James W. MacDonald 57k • written 6.0 years ago by Vinicius Henrique da Silva ▴ 40

votes

replies

1.2k

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parody r NA

6.4 years ago upendrakumar.devisetty • 0

vote

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1.0k

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snpStats BioConductor LD Linkage Disequilibrium NA

6.5 years ago remi.tournebize ▴ 10

votes

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1.6k

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deseq2 cook NA

updated 6.8 years ago by Michael Love 33k • written 6.8 years ago by skiaphrene • 0

votes

replies

5.1k

views

EdgeR rnaseq NA

updated 6.9 years ago by Aaron Lun ★ 27k • written 6.9 years ago by elliott77 • 0

16 results • Page 1 of 1

Recent ...

Replies

Comment: featureCounts - paired-end data by Yanfang • 0

Hey Wei shi, May I ask you something related to featureCounts? I have only paired end reads (RNAseq) mapping to its genome by bowtie2, an…

Comment: WGCNA adjust p value by Kevin Blighe 3.2k

Cross-posted: https://www.biostars.org/p/9482927/

Comment: Unique GPos taking into account mcols by Marcel Ramos 540

Hi @maltethodberg We currently do not have a method that does this. Perhaps a `duplicated` method is appropriate but I am not the develop…

Comment: What are these genes ? [How to get Ensembl IDs for them] by abf ▴ 30

Mouse genes are not typically all capitals, but I was able to find a reference to a mouse gene in NCBI to [CH36-217G15][1]. Maybe this is …

Comment: Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db. by abf ▴ 30

I should note that when I query org.Mm.eg.db using the gene Symbols associated with my differential expression data I find a 1:1 correspond…

Votes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Answer: What lfcSE is dependent upon?

Comment: P value and Adj. P value showing N/A

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