Bioconductor NA

Showing : NA • reset

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2.3k

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IRanges GRanges NA

updated 2.2 years ago by ATpoint ★ 4.6k • written 2.2 years ago by Timucin • 0

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1.6k

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pvalue NA R DESeq2

updated 3.0 years ago by ATpoint ★ 4.6k • written 3.0 years ago by Johan Largo • 0

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973

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qCount QuasR NA

updated 4.3 years ago by Michael Stadler ▴ 350 • written 4.4 years ago by jabbar_campbell • 0

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4.4k

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limma mass spec na

updated 5.7 years ago by Gordon Smyth 52k • written 5.7 years ago by reubenmcgregor88 • 0

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1.4k

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methylkit normalizecoverage NA

updated 6.1 years ago by altuna akalin ▴ 20 • written 6.1 years ago by GFM ▴ 20

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4.2k

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deseq2 coldata NA

updated 3 months ago by Michael Love 43k • written 6.3 years ago by t.kuilman ▴ 170

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2.5k

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edger dgelist NA egsea

updated 6.8 years ago by Gordon Smyth 52k • written 6.8 years ago by belmore • 0

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915

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rtracklayer NA

8.2 years ago Dario Strbenac ★ 1.5k

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1.3k

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reportingtools deseq2 NA pvalue

updated 8.4 years ago by Michael Love 43k • written 8.4 years ago by NMostajo ▴ 10

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4.8k

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deseq2 NA cooksCutoff

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by colaneri ▴ 30

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1.9k

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gwastools lrr baf NA

updated 9.0 years ago by Stephanie M. Gogarten ▴ 870 • written 9.0 years ago by Vinicius Henrique da Silva ▴ 40

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1.6k

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rtracklayer NA BED getseq

9.0 years ago Dimitris Polychronopoulos ▴ 80

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1.7k

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graphics confidence interval NA

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by Vinicius Henrique da Silva ▴ 40

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Gviz Plot NA graph Job

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by Vinicius Henrique da Silva ▴ 40

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1.7k

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parody r NA

9.7 years ago upendrakumar.devisetty • 0

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2.1k

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snpStats BioConductor LD Linkage Disequilibrium NA

9.8 years ago remi.tournebize ▴ 10

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2.4k

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deseq2 cook NA

updated 10.1 years ago by Michael Love 43k • written 10.1 years ago by skiaphrene ▴ 10

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EdgeR rnaseq NA

updated 10.2 years ago by Aaron Lun ★ 28k • written 10.2 years ago by elliott77 • 0

18 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Sam • 0

Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well [1]: /media/images/…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330