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complex-design
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9
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21
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5.4k
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limma - complex design with paired samples, sex and batch effect
limma
paired samples
complex-design
8.4 years ago • updated 8.3 years ago
aec
▴ 90
7
votes
11
replies
2.3k
views
Using edgeR on pre-post treatment control design
edgeR
complex-design
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
lwc628
▴ 20
7
votes
6
replies
4.0k
views
Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma
model matrix
limma design matrix
complex-design
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
Guido Hooiveld
★ 3.9k
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.2 years ago by
m.van_iterson
▴ 20 • written 8.2 years ago by
roser.navarro
• 0
3
votes
4
replies
1.2k
views
Complicated unbalanced block DOE with partially paired samples and analysis
limma
complex-design
paired design
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
ML18
▴ 10
1
vote
3
replies
6.6k
views
Combat - error - system is computationally singular
combat
software error
rnaseq
complex-design
updated 9.6 years ago by
Peter Langfelder
★ 3.0k • written 9.6 years ago by
Stefano Mangiola
▴ 10
1
vote
1
reply
2.9k
views
Factorial Design with DESeq2; contrast problem.
deseq2
multiple factor design
complex-design
updated 9.2 years ago by
Michael Love
42k • written 9.2 years ago by
sifujio
• 0
7 results • Page
1 of 1
Recent ...
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Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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