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EBImage installs but won't load on Mac OS 10.6.4
GO
GUI
PROcess
convert
EBImage
GO
GUI
PROcess
convert
EBImage
15.1 years ago
W. A. Green
▴ 40
0
votes
1
reply
1.5k
views
EBImage installs but won't load on Mac OS 10.6.4
GO
GUI
PROcess
convert
EBImage
GO
GUI
PROcess
convert
EBImage
updated 15.1 years ago by
W. A. Green
▴ 40 • written 15.1 years ago by
Gregoire Pau
▴ 310
0
votes
0
replies
987
views
Limma: How to analyze 1- and 2- colour Agilent
Microarray
Normalization
limma
convert
Microarray
Normalization
limma
convert
15.2 years ago
Gordon Smyth
53k
0
votes
2
replies
1.2k
views
IRanges, GenomicRanges, GenomicFeatures?
Coverage
Annotation
TranscriptDb
convert
GenomicFeatures
Coverage
Annotation
TranscriptDb
updated 15.2 years ago by
Steve Lianoglou
★ 13k • written 15.2 years ago by
Oleg Moskvin
▴ 60
0
votes
3
replies
1.7k
views
EBImage installs but won't load on Mac OS 10.6.4
GUI
PROcess
convert
EBImage
GUI
PROcess
convert
EBImage
updated 15.3 years ago by
Gregoire Pau
▴ 310 • written 15.3 years ago by
W. A. Green
▴ 40
0
votes
0
replies
2.1k
views
BioNet - interpretation of node score (Eva Benito Garagorri)
SNP
Microarray
GO
Network
Clustering
Cancer
Organism
mgug4122a
probe
limma
convert
SNP
15.3 years ago
Daniela Beißer
▴ 20
0
votes
3
replies
2.6k
views
Gating with an ellipsoidGate
convert
flowCore
convert
flowCore
updated 15.3 years ago by
Roger Leigh
▴ 60 • written 15.3 years ago by
Josef Spidlen
▴ 140
0
votes
0
replies
1.1k
views
how to create a TranscriptDb object from bed file
TranscriptDb
convert
edgeR
TranscriptDb
convert
edgeR
15.4 years ago
Ann Loraine
▴ 110
0
votes
2
replies
1.1k
views
Celegans.db_2.3.5: Wormbase version
celegans
affy
convert
celegans
affy
convert
updated 15.4 years ago by
Marc Carlson
★ 7.2k • written 15.4 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
1.5k
views
Can I use Bioconductor to parse *.chp (Affymetrix) files?
Normalization
convert
Normalization
convert
updated 15.4 years ago by
James W. MacDonald
68k • written 15.4 years ago by
Anton Kratz
▴ 10
0
votes
5
replies
2.8k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 15.4 years ago by
Alex Levitchi
▴ 30 • written 15.4 years ago by
Sean Davis
21k
0
votes
2
replies
1.9k
views
GEOquery: GDS2MA failure
convert
convert
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Philipp Pagel
▴ 190
0
votes
0
replies
1.0k
views
Convert arabidopsis TAIR6 coordinates to TAIR9?
convert
convert
15.5 years ago
Xiaohui Wu
▴ 280
0
votes
8
replies
2.6k
views
CRytoscape: an early release
convert
convert
updated 15.5 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 15.5 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
926
views
Concerning your response to "Error message working with ChIPpeakAnno"
convert
biomaRt
convert
biomaRt
15.5 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.6k
views
SNP chip
SNP
convert
SNP
convert
updated 15.5 years ago by
James W. MacDonald
68k • written 15.5 years ago by
Adrian Johnson
▴ 330
0
votes
1
reply
1.5k
views
biomaRt Error : Affy Human Exon array annotation
cdf
annotate
convert
biomaRt
cdf
annotate
convert
biomaRt
updated 15.5 years ago by
James W. MacDonald
68k • written 15.5 years ago by
Md.Mamunur Rashid
▴ 260
0
votes
0
replies
1.2k
views
Is there any function to read genbank flat files.
convert
convert
15.6 years ago
Fahim Md
▴ 250
2
votes
1
reply
1.4k
views
handling 12 bit tiffs in EBImage
convert
EBImage
convert
EBImage
updated 15.6 years ago by
Gregoire Pau
▴ 310 • written 15.6 years ago by
Rajarshi Guha
▴ 120
0
votes
6
replies
1.8k
views
writing a fasta file in blocks
probe
convert
probe
convert
updated 15.6 years ago by
Martin Morgan
25k • written 15.6 years ago by
Fahim Md
▴ 250
0
votes
1
reply
965
views
[Bioc-devel] Problem with merge
convert
convert
updated 15.7 years ago by
Sean Davis
21k • written 15.7 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
1.7k
views
GEOquery, GSE, and MAList
convert
convert
updated 15.7 years ago by
James F. Reid
▴ 610 • written 15.7 years ago by
Timothy Wu
▴ 120
0
votes
0
replies
1.6k
views
R functions for genetic distances
SNP
Genetics
convert
SNP
Genetics
convert
15.7 years ago
Waddell, Peter J
▴ 10
0
votes
13
replies
2.0k
views
rtracklayer GraphTrackLine
convert
convert
updated 15.7 years ago by
Michael Lawrence
★ 11k • written 15.7 years ago by
Dario Strbenac
★ 1.6k
0
votes
1
reply
1.5k
views
loop over IRanges spaces
Coverage
convert
rtracklayer
ASSIGN
Coverage
convert
rtracklayer
ASSIGN
updated 15.7 years ago by
Michael Lawrence
★ 11k • written 15.7 years ago by
Yvan
▴ 60
0
votes
0
replies
906
views
[R] Poblems wih EBImage
convert
EBImage
convert
EBImage
15.8 years ago
Gregoire Pau
▴ 310
0
votes
6
replies
3.5k
views
converting position from '-' strand to '+' strand
convert
convert
updated 3.5 years ago by
analeonpalacio
▴ 10 • written 15.8 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
659
views
Get gene expression data by averaging probes corresponding to the gene?
Microarray
probe
limma
convert
Microarray
probe
limma
convert
15.8 years ago
Gordon Smyth
53k
0
votes
1
reply
1.1k
views
Get gene expression data by averaging probes corresponding to the gene?
Microarray
probe
convert
Microarray
probe
convert
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
697820169
▴ 20
0
votes
2
replies
1.4k
views
simple functional analysis of gene lists
Transcription
GO
convert
Transcription
GO
convert
updated 15.8 years ago by
Juan C Oliveros Collazos
▴ 190 • written 15.8 years ago by
Rainer Tischler
▴ 60
0
votes
4
replies
4.8k
views
GEOquery
convert
GEOquery
convert
GEOquery
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
877
views
xps: convert a data frame to ExprTreeSet
convert
convert
updated 15.8 years ago by
cstrato
★ 3.9k • written 15.8 years ago by
Steve Shen
▴ 330
0
votes
1
reply
939
views
affy2agi
affy
convert
affy
convert
updated 15.9 years ago by
Yong Li
▴ 190 • written 15.9 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
4
replies
2.1k
views
Converting data into MAlist to use in LIMMA
Sequencing
Microarray
Annotation
Normalization
affy
convert
Sequencing
Microarray
affy
updated 15.9 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 15.9 years ago by
Aubin-Horth Nadia
▴ 60
0
votes
2
replies
1.5k
views
function handle in R
convert
convert
updated 15.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.9 years ago by
Javier Pérez Florido
▴ 840
0
votes
0
replies
969
views
troubles with writeTpmap {affxparser} - backconverted BPMAP fails to process
PROcess
convert
PROcess
convert
16.1 years ago
Ann Loraine
▴ 110
0
votes
2
replies
1.1k
views
Probeid to GOTerms... from AnnotationDBI?
GO
convert
AnnotationDbi
GO
convert
AnnotationDbi
updated 16.1 years ago by
Marc Carlson
★ 7.2k • written 16.1 years ago by
SAURIN
★ 1.1k
0
votes
1
reply
1.6k
views
problem illumina annotation with lumi
Microarray
annotate
convert
lumi
Microarray
annotate
convert
lumi
16.1 years ago
Md.Mamunur Rashid
▴ 260
0
votes
4
replies
1.8k
views
Agi4x44PreProcess
convert
GEOquery
Agi4x44PreProcess
convert
GEOquery
Agi4x44PreProcess
updated 16.1 years ago by
Neel Aluru
▴ 460 • written 16.1 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.8k
views
unexpected genes names list using getBM{biomaRt}
Alignment
convert
biomaRt
Alignment
convert
biomaRt
16.1 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
2
replies
1.6k
views
probe to entrezID mapping with aafLocusLink
GO
hgu133plus2
probe
annaffy
convert
GO
hgu133plus2
probe
annaffy
convert
updated 16.1 years ago by
James W. MacDonald
68k • written 16.1 years ago by
Merja Heinaniemi
▴ 10
0
votes
1
reply
768
views
Grid layout to data.frame with row & colums
Cancer
convert
Cancer
convert
updated 16.1 years ago by
James W. MacDonald
68k • written 16.1 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
987
views
signals subtraction
Microarray
limma
convert
Microarray
limma
convert
16.2 years ago
Hui-Yi Chu
▴ 160
0
votes
6
replies
2.0k
views
Is there a package or a way to convert "probesets" to "genes"
Microarray
affy
limma
convert
Microarray
affy
limma
convert
updated 16.2 years ago by
Tobias Straub
▴ 430 • written 16.2 years ago by
Cheng-Yuan Kao
▴ 100
0
votes
2
replies
1.3k
views
Annotating Illumina Data from ArrayExpress
convert
ArrayExpress
convert
ArrayExpress
updated 16.2 years ago by
Marc Carlson
★ 7.2k • written 16.2 years ago by
Md.Mamunur Rashid
▴ 260
0
votes
5
replies
3.8k
views
vsn: meanSdPlot + MAlist
Normalization
vsn
limma
convert
Normalization
vsn
limma
convert
updated 16.2 years ago by
Martin Morgan
25k • written 16.2 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
5.5k
views
Converting Genotyping result for PLINK
convert
convert
updated 16.2 years ago by
Claus-Jürgen Scholz
▴ 90 • written 16.2 years ago by
Peter Ganske
▴ 50
0
votes
2
replies
2.8k
views
hclust to newick format?
convert
convert
updated 16.2 years ago by
Julia Engelmann
▴ 10 • written 16.2 years ago by
michael watson IAH-C
★ 3.4k
0
votes
0
replies
987
views
From hg19 to ensembl56
convert
biomaRt
convert
biomaRt
16.2 years ago
Morten Hansen
▴ 50
0
votes
2
replies
3.0k
views
flowCore: inverse logicle transformation of flow cytometry data
Cancer
convert
flowCore
Cancer
convert
flowCore
updated 16.3 years ago by
Nishant Gopalakrishnan
▴ 340 • written 16.3 years ago by
Josef Spidlen
▴ 140
462 results • Page
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Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
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Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
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by
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Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package
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I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe
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There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
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Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
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