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EBImage installs but won't load on Mac OS 10.6.4
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15.1 years ago W. A. Green ▴ 40
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GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
updated 15.1 years ago by ▴ 40 • written 15.1 years ago by ▴ 310
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Limma: How to analyze 1- and 2- colour Agilent
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15.2 years ago Gordon Smyth 53k
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IRanges, GenomicRanges, GenomicFeatures?
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updated 15.2 years ago by ★ 13k • written 15.2 years ago by ▴ 60
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EBImage installs but won't load on Mac OS 10.6.4
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updated 15.3 years ago by ▴ 310 • written 15.3 years ago by ▴ 40
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BioNet - interpretation of node score (Eva Benito Garagorri)
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15.3 years ago Daniela Beißer ▴ 20
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Gating with an ellipsoidGate
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updated 15.3 years ago by ▴ 60 • written 15.3 years ago by ▴ 140
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how to create a TranscriptDb object from bed file
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15.4 years ago Ann Loraine ▴ 110
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Celegans.db_2.3.5: Wormbase version
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updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ★ 4.3k
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Can I use Bioconductor to parse *.chp (Affymetrix) files?
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downloading different kinds of microarray data
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GEOquery: GDS2MA failure
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Convert arabidopsis TAIR6 coordinates to TAIR9?
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15.5 years ago Xiaohui Wu ▴ 280
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CRytoscape: an early release
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Concerning your response to "Error message working with ChIPpeakAnno"
convert biomaRt convert biomaRt
15.5 years ago Julie Zhu ★ 4.3k
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updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 330
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biomaRt Error : Affy Human Exon array annotation
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updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 260
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Is there any function to read genbank flat files.
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15.6 years ago Fahim Md ▴ 250
2
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handling 12 bit tiffs in EBImage
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updated 15.6 years ago by ▴ 310 • written 15.6 years ago by ▴ 120
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updated 15.6 years ago by 25k • written 15.6 years ago by ▴ 250
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updated 15.7 years ago by 21k • written 15.7 years ago by ★ 4.3k
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GEOquery, GSE, and MAList
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updated 15.7 years ago by ▴ 610 • written 15.7 years ago by ▴ 120
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15.7 years ago Waddell, Peter J ▴ 10
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rtracklayer GraphTrackLine
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loop over IRanges spaces
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updated 15.7 years ago by ★ 11k • written 15.7 years ago by ▴ 60
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15.8 years ago Gregoire Pau ▴ 310
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converting position from '-' strand to '+' strand
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updated 3.5 years ago by ▴ 10 • written 15.8 years ago by ★ 1.1k
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Get gene expression data by averaging probes corresponding to the gene?
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15.8 years ago Gordon Smyth 53k
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Get gene expression data by averaging probes corresponding to the gene?
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updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 20
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simple functional analysis of gene lists
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updated 15.8 years ago by ▴ 190 • written 15.8 years ago by ▴ 60
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updated 15.8 years ago by 21k • written 15.8 years ago by ★ 4.3k
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updated 15.8 years ago by ★ 3.9k • written 15.8 years ago by ▴ 330
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affy2agi
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updated 15.9 years ago by ▴ 190 • written 15.9 years ago by ★ 1.5k
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updated 15.9 years ago by ★ 1.9k • written 15.9 years ago by ▴ 60
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updated 15.9 years ago by 6.7k • written 15.9 years ago by ▴ 840
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Probeid to GOTerms... from AnnotationDBI?
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16.1 years ago Md.Mamunur Rashid ▴ 260
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Agi4x44PreProcess
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updated 16.1 years ago by ▴ 460 • written 16.1 years ago by ★ 1.3k
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unexpected genes names list using getBM{biomaRt}
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16.1 years ago steffen@stat.Berkeley.EDU ▴ 600
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updated 16.1 years ago by 68k • written 16.1 years ago by ★ 1.9k
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16.2 years ago Hui-Yi Chu ▴ 160
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Is there a package or a way to convert "probesets" to "genes"
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updated 16.2 years ago by ▴ 430 • written 16.2 years ago by ▴ 100
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Annotating Illumina Data from ArrayExpress
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updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 260
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vsn: meanSdPlot + MAlist
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updated 16.2 years ago by 25k • written 16.2 years ago by ★ 4.1k
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Converting Genotyping result for PLINK
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updated 16.2 years ago by ▴ 90 • written 16.2 years ago by ▴ 50
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updated 16.2 years ago by ▴ 10 • written 16.2 years ago by ★ 3.4k
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From hg19 to ensembl56
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16.2 years ago Morten Hansen ▴ 50
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flowCore: inverse logicle transformation of flow cytometry data
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updated 16.3 years ago by ▴ 340 • written 16.3 years ago by ▴ 140
462 results • Page 6 of 10
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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
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A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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