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Duplicated Gene IDs - averaging
convert
metaArray
convert
metaArray
14.1 years ago
boczniak767
▴ 740
0
votes
3
replies
1.6k
views
chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO
Annotation
convert
biomaRt
bridge
ChIPpeakAnno
Annotation
convert
biomaRt
bridge
updated 14.2 years ago by
Andreia Fonseca
▴ 810 • written 14.3 years ago by
Julie Zhu
★ 4.3k
0
votes
2
replies
2.1k
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import.bw to Rle?
GO
Cancer
convert
GO
Cancer
convert
updated 14.2 years ago by
Michael Lawrence
★ 11k • written 14.3 years ago by
Janet Young
▴ 740
0
votes
1
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1.6k
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creating a UniprotIdentifier within GSEABase
Annotation
Cancer
hgu95av2
convert
GSEABase
Annotation
Cancer
hgu95av2
convert
GSEABase
updated 14.3 years ago by
Martin Morgan
25k • written 14.3 years ago by
Mark Cowley
▴ 910
0
votes
0
replies
888
views
chippeakanno related
Annotation
annotate
convert
biomaRt
bridge
Annotation
annotate
convert
biomaRt
bridge
14.3 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
977
views
chippeakanno related
Annotation
convert
biomaRt
bridge
Annotation
convert
biomaRt
bridge
14.3 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
672
views
Plier+16 in Bioconductor
convert
convert
14.3 years ago
Adam Nunn
▴ 10
0
votes
3
replies
1.3k
views
error in coverting readaligned object to GenomeData
GO
convert
GO
convert
updated 14.3 years ago by
Martin Morgan
25k • written 14.3 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.3k
views
adding annotation to illumina data
limma
convert
lumi
limma
convert
lumi
14.3 years ago
Kripa R
▴ 180
0
votes
2
replies
1.3k
views
inconsistent CHR mapping- IlluminaHumanMethylation450k.db
Annotation
probe
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lumi
Annotation
probe
convert
lumi
updated 14.4 years ago by
sohkhan@notes.cc.sunysb.edu
▴ 30 • written 14.4 years ago by
David Martino
▴ 10
0
votes
1
reply
905
views
Very high memory usage when using rtracklayer to import GFF3
convert
rtracklayer
convert
rtracklayer
updated 14.4 years ago by
Michael Lawrence
★ 11k • written 14.4 years ago by
Vince S. Buffalo
▴ 140
0
votes
2
replies
1.6k
views
snpMatrix trouble with read.HapMap.data() and ld.snp()
SNP
convert
SNP
convert
updated 14.4 years ago by
David Clayton
▴ 20 • written 14.4 years ago by
rna seq
▴ 90
0
votes
0
replies
992
views
Segmentation fault using pair.result.ld.snp in snpMatrix package
SNP
convert
SNP
convert
14.4 years ago
rna seq
▴ 90
0
votes
2
replies
1.3k
views
IRanges package: findOverlaps on blobs
Cancer
convert
IRanges
Cancer
convert
IRanges
14.4 years ago
Hervé Pagès
16k
0
votes
1
reply
1.4k
views
fold change after gcrma()
gcrma
convert
gcrma
convert
updated 14.4 years ago by
Benilton Carvalho
★ 4.3k • written 14.4 years ago by
yotsawat pomyen
▴ 40
0
votes
1
reply
1.8k
views
convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP
convert
GGtools
snpMatrix
SNP
convert
GGtools
snpMatrix
updated 14.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.4 years ago by
Mao Jianfeng
▴ 290
0
votes
2
replies
1.2k
views
IRanges package: findOverlaps on blobs
convert
IRanges
convert
IRanges
updated 14.5 years ago by
Steve Lianoglou
★ 13k • written 14.5 years ago by
Fahim Md
▴ 250
0
votes
2
replies
1.6k
views
arrayQualityMEtrics
convert
arrayQualityMetrics
convert
arrayQualityMetrics
updated 14.5 years ago by
Wolfgang Huber
★ 13k • written 14.5 years ago by
Guillaume Meurice
▴ 210
0
votes
2
replies
1.4k
views
PICS: vignette code outdated (use of GenomeData-object)
convert
PICS
convert
PICS
updated 14.5 years ago by
Valerie Obenchain
★ 6.8k • written 14.5 years ago by
Samuel Wuest
▴ 330
0
votes
8
replies
2.7k
views
Converting list to a matrix
convert
convert
updated 14.6 years ago by
Arunava Chakravartty
▴ 50 • written 14.6 years ago by
pankaj borah
▴ 120
0
votes
9
replies
2.4k
views
EBImage Error in .Call("lib_readImages", as.character(files), as.integer(colormode),
convert
convert
updated 14.6 years ago by
Gregoire Pau
▴ 310 • written 14.6 years ago by
Vladimir Morozov
▴ 130
0
votes
0
replies
714
views
Are there any module could be used to convert a data.frame table to a matrix format.
convert
convert
14.7 years ago
a a
▴ 10
0
votes
5
replies
2.7k
views
Get Gene annotation (GO terms)
GO
convert
GO
convert
updated 14.7 years ago by
Marc Carlson
★ 7.2k • written 14.7 years ago by
David
▴ 860
0
votes
5
replies
3.5k
views
fastq files
convert
convert
updated 14.7 years ago by
Martin Morgan
25k • written 14.7 years ago by
David
▴ 860
0
votes
2
replies
2.9k
views
comparing HG-U219 data to HG-U133 data from public databases
Normalization
convert
ArrayExpress
Normalization
convert
ArrayExpress
updated 14.7 years ago by
Sole Acha, Xavi
▴ 110 • written 14.7 years ago by
Andreas Heider
▴ 340
0
votes
1
reply
1.3k
views
find overlaping genes in ENSEMBL gene ID list and NCBI gene ID list
convert
convert
updated 14.7 years ago by
Hervé Pagès
16k • written 14.7 years ago by
Fong Chun Chan
▴ 20
0
votes
0
replies
1.6k
views
[Bioc-sig-seq] SRAdb and getFastq
Cancer
convert
Cancer
convert
14.7 years ago
Jack Zhu
▴ 170
0
votes
4
replies
2.0k
views
EBImage: alpha plane in grey scale
convert
EBImage
convert
EBImage
updated 14.7 years ago by
Gregoire Pau
▴ 310 • written 14.7 years ago by
Samuel GRANJEAUD - IR/ICIM
▴ 60
0
votes
2
replies
958
views
Normalization quality assessment tools?
Normalization
convert
Normalization
convert
updated 14.7 years ago by
Wolfgang Huber
★ 13k • written 14.7 years ago by
Giulio Di Giovanni
▴ 540
0
votes
6
replies
3.1k
views
IPI to entrez id
convert
convert
14.7 years ago
viritha kaza
▴ 580
0
votes
1
reply
3.1k
views
limma topTable annotation
GO
hgu133plus2
affy
limma
convert
Category
GO
hgu133plus2
affy
limma
convert
Category
updated 14.7 years ago by
David Iles
▴ 130 • written 14.7 years ago by
Gordon Smyth
53k
0
votes
1
reply
1000
views
limma topTable annotation
GO
hgu133plus2
affy
limma
convert
GO
hgu133plus2
affy
limma
convert
updated 14.7 years ago by
James W. MacDonald
68k • written 14.7 years ago by
David Iles
▴ 130
0
votes
7
replies
2.2k
views
converting Affy indices to x,y coordinates
cdf
probe
convert
cdf
probe
convert
updated 14.7 years ago by
Mounts, William
▴ 30 • written 14.7 years ago by
Todd Allen
▴ 20
0
votes
1
reply
1.1k
views
How to make a probe package with the GPL1073.probe file from GEO.
cdf
probe
affy
convert
AnnotationDbi
cdf
probe
affy
convert
AnnotationDbi
updated 14.8 years ago by
Guido Hooiveld
★ 4.1k • written 14.8 years ago by
李晓东
▴ 10
0
votes
0
replies
1.3k
views
Gene Name annotation with ChIPpeakAnno
Annotation
AnnotationData
annotate
convert
biomaRt
Annotation
AnnotationData
annotate
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
870
views
Gene Name annotation
Annotation
annotate
convert
ChIPpeakAnno
Annotation
annotate
convert
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation
GO
probe
affy
convert
Annotation
GO
probe
affy
convert
14.8 years ago
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.5k
views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation
GO
probe
annotate
convert
Annotation
GO
probe
annotate
convert
updated 14.8 years ago by
Paul Geeleher
★ 1.3k • written 14.8 years ago by
Budhayash Gautam
▴ 90
0
votes
1
reply
1.3k
views
question about get a summary gene expression information from the probe set associated with one specific gene
Annotation
GO
cdf
probe
affy
convert
ASSIGN
Annotation
GO
cdf
probe
affy
convert
updated 14.9 years ago by
Xiaowei Guan
▴ 90 • written 14.9 years ago by
James W. MacDonald
68k
0
votes
0
replies
1.1k
views
question about get a summary gene expression information from the probe set associated with one specific gene
Annotation
probe
convert
ASSIGN
Annotation
probe
convert
ASSIGN
14.9 years ago
Xiaowei Guan
▴ 90
0
votes
0
replies
833
views
ESD files from Beckman
convert
convert
14.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.6k
views
: [R] Problems wih EBImage for windows 7 --Loading required package: abind Error in library.dynam(lib, package, package.lib) : shared library 'EBImag…
GUI
convert
EBImage
GUI
convert
EBImage
14.9 years ago
Evan Misshula
▴ 80
0
votes
0
replies
1.2k
views
Dependency Problems for Windows 7 EBImage and ImageMagic "can't load Error in library.dynam(lib, package, package.lib) : shared library 'EBImage' not…
GO
convert
EBImage
GO
convert
EBImage
14.9 years ago
Evan Misshula
▴ 80
0
votes
0
replies
1.3k
views
Dependency Problems for Windows 7 EBImage and ImageMagic "can't load Error in library.dynam(lib, package, package.lib) : shared library 'EBImage' not…
GO
convert
EBImage
GO
convert
EBImage
14.9 years ago
Evan Misshula
▴ 80
0
votes
1
reply
1.2k
views
: [R] Problems wih EBImage for windows 7
convert
EBImage
convert
EBImage
updated 14.9 years ago by
Gregoire Pau
▴ 310 • written 14.9 years ago by
Evan Misshula
▴ 80
0
votes
1
reply
1.2k
views
missing reads in alignerBAM
Alignment
convert
Alignment
convert
updated 14.9 years ago by
Martin Morgan
25k • written 14.9 years ago by
Daniel.Berner@unibas.ch
▴ 90
0
votes
2
replies
1.5k
views
GEOquery error
convert
GEOquery
convert
GEOquery
updated 14.9 years ago by
Sean Davis
21k • written 14.9 years ago by
Reema Singh
▴ 570
0
votes
1
reply
1.2k
views
ExonMap and xmap package question
probe
limma
convert
exonmap
probe
limma
convert
exonmap
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
932
views
CRLMM calls to forward strand genotypes?
Annotation
convert
crlmm
Annotation
convert
crlmm
14.9 years ago
wrighth
▴ 260
0
votes
0
replies
1.1k
views
how to go from an short read alignment file to a SNPs table for population genetic analysis
convert
genomes
convert
genomes
14.9 years ago
Sean Davis
21k
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Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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