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ArrayExpress as NChannelSet data into limma-compatible type
limma convert ArrayExpress SJava limma convert ArrayExpress SJava
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 60
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12
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3.6k
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BioMart and Ensembl questions
convert biomaRt convert biomaRt
updated 16.1 years ago by ▴ 970 • written 16.2 years ago by ▴ 10
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5.8k
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Reading GFF files into R and GenomeGraphs
Coverage Annotation Visualization convert GLAD GenomeGraphs rtracklayer IRanges Coverage
16.3 years ago Michael Dondrup ▴ 140
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1.0k
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An issue in flowCore-package (?)
convert flowCore convert flowCore
16.3 years ago Florian Hahne ▴ 540
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943
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An issue in flowCore-package (?)
convert flowCore convert flowCore
16.3 years ago Florian Hahne ▴ 540
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0
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1.4k
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How to use ExpressionSet for further Analysis
convert ArrayExpress convert ArrayExpress
16.3 years ago Md.Mamunur Rashid ▴ 260
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1
reply
1.0k
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arrayQualityMetrics
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
updated 16.3 years ago by 25k • written 16.3 years ago by ▴ 80
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1
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1.6k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 16.4 years ago by ▴ 20 • written 16.4 years ago by ▴ 50
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1
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1.4k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
16.4 years ago Mark Robinson ★ 1.1k
0
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3
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2.1k
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Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 100
0
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3
replies
1.7k
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KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 16.5 years ago by ▴ 400 • written 16.5 years ago by ▴ 30
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890
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How to check if gene name is an alias or misspelt
Cancer convert Cancer convert
16.6 years ago Gordon Smyth 53k
0
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8
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2.2k
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HuGene annotation and htmls
Annotation convert xps Annotation convert xps
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 510
0
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0
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1.1k
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time series analysis in samr
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16.6 years ago Assa Yeroslaviz ★ 1.5k
0
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4
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1.4k
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org.Hs.eg question
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updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 350
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0
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1.1k
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Gostats and custom list
Annotation Pathways GO Yeast convert GOstats Category Annotation Pathways GO Yeast
16.7 years ago Iain Wallace ▴ 50
0
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3
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1.4k
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Gostats and custom list
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updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 50
0
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3
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7.5k
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org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer Homo sapiens convert Cancer Homo sapiens convert
updated 16.7 years ago by ▴ 10 • written 16.7 years ago by ★ 1.1k
0
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0
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1.7k
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GSEA to discover co-regulated genes
Transcription Annotation Pathways Infrastructure probe convert GSEABase Transcription
16.8 years ago Paul Geeleher ★ 1.3k
0
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4
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1.7k
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Limma: Question about extracting 2-channel data
GO limma convert GO limma convert
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 120
0
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3
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1.1k
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confused about mget with u133x3p.db and u133x3pALIAS2PROBE
probe convert probe convert
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 350
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2
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1.4k
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Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.8 years ago by ★ 6.5k • written 16.8 years ago by ▴ 20
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2
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1.3k
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onvert an already existing CDF environment into a CDF file or CDF package
cdf convert cdf convert
updated 16.9 years ago by ▴ 330 • written 16.9 years ago by ★ 1.0k
0
votes
1
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1.1k
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altrenative gene symbols
convert convert
updated 16.9 years ago by ★ 7.2k • written 16.9 years ago by ▴ 200
0
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0
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855
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Problem of combine function when combining different numeric types
convert convert
16.9 years ago Pan Du ★ 1.2k
0
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0
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811
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Problem of combine function when combining different numeric types
Cancer convert Cancer convert
16.9 years ago Martin Morgan 25k
0
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1
reply
727
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MA.loess
GO convert GO convert
updated 17.0 years ago by ★ 13k • written 17.0 years ago by ▴ 40
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2
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can can affyQAReport (package affyQCReport) be adapted for use with Affy Gene ST arrays that are not incorporated into an affyBatch?
cdf convert cdf convert
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ▴ 830
0
votes
1
reply
1.7k
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Nimblegen expression dataset(.xys or.pair files/folders)
convert convert
updated 17.1 years ago by ▴ 730 • written 17.1 years ago by ▴ 30
0
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3
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1.8k
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How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?
Annotation GO convert lumi Annotation GO convert lumi
updated 17.1 years ago by ★ 1.2k • written 17.1 years ago by ▴ 150
0
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3
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1.4k
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GEOQuery - from a LOCAL SOFT file to an ExprSet object
convert GEOquery convert GEOquery
updated 17.2 years ago by 21k • written 17.2 years ago by ★ 3.4k
0
votes
1
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1.8k
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arrayQualityMetrics - how do I use this with an MAList object???
Cancer convert arrayQualityMetrics Cancer convert arrayQualityMetrics
updated 17.2 years ago by ▴ 680 • written 17.2 years ago by 25k
0
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0
replies
1.3k
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arrayQualityMetrics - how do I use this with an MAList object???
convert arrayQualityMetrics convert arrayQualityMetrics
17.2 years ago Park-Ng, Zaneta ▴ 40
0
votes
2
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1.8k
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ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 40
1
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3
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Converting to official gene symbols
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updated 17.3 years ago by ▴ 20 • written 17.3 years ago by ▴ 90
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votes
4
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1.5k
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Converting between old and new annotation packages?
Annotation convert Annotation convert
17.4 years ago Jeff Gentry ★ 3.9k
0
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0
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1.0k
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Microarray analysis question
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17.4 years ago Naomi Altman ★ 6.0k
0
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1
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1.0k
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lumiHumanAll.db, Gostats
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updated 17.4 years ago by ▴ 270 • written 17.4 years ago by ★ 1.2k
0
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0
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GenBank RefSeq conversion
Annotation GO convert biomaRt Annotation GO convert biomaRt
17.4 years ago Sean Davis 21k
0
votes
3
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1.8k
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making gene sets for geneSetTest of Limma
limma convert limma convert
updated 17.5 years ago by 53k • written 17.5 years ago by ▴ 600
1
vote
2
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3.9k
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GenBank RefSeq conversion
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updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 150
0
votes
5
replies
2.4k
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converting gene name to affy probe
probe convert biomaRt probe convert biomaRt
17.5 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
1.2k
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Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 17.5 years ago by ▴ 30 • written 17.5 years ago by 53k
0
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0
replies
900
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warning message of lumiR
Microarray Annotation probe convert lumi Microarray Annotation probe convert lumi
17.5 years ago Pan Du ★ 1.2k
0
votes
1
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About Illumina annotation packages lumixxxAll.db
Annotation lumiMouseV1 probe convert lumi Annotation lumiMouseV1 probe convert lumi
17.5 years ago Pan Du ★ 1.2k
0
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Creating an exprSet object with agilent single colour
Microarray convert Microarray convert
17.5 years ago Wendy Chen ▴ 40
0
votes
4
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1.8k
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Example of converting graphNEL object to ajacency matrix?
Network convert Network convert
updated 17.6 years ago by ★ 5.5k • written 17.6 years ago by ▴ 50
0
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0
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RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene 1.0 ST Array
Microarray cdf probe affy convert Microarray cdf probe affy convert
17.7 years ago Fang, Hong* ▴ 30
0
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0
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2.2k
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Does R code exist to read Axon Binary file (ABF) Format?
convert convert
17.8 years ago Glynn, Earl ▴ 170
0
votes
2
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How to retrieve environment variables from custom build annotation packages
Proteomics Annotation convert Proteomics Annotation convert
updated 17.9 years ago by ★ 13k • written 17.9 years ago by ▴ 130
462 results • Page 7 of 10
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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