Showing : cn.MOPS • reset
1
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2
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549
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" 'end' must be >= 'start' - 1" error in cn.mops
cn.mops
14 months ago User000 • 0
0
votes
3
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923
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cn.mops segmentation error
cn.mops
updated 15 months ago by • 0 • written 16 months ago by ▴ 40
0
votes
1
reply
482
views
Suspected bug on GetReadCountsFromBAM in cn.mops
cn.mops
3.3 years ago asafpr • 0
0
votes
1
reply
616
views
How to use panelcn.mops to detect CNVs from whole genome data by getting count windows from BED file?
cn.mops panelcn.mops CNV detection CNV
3.7 years ago metzgerlukas • 0
0
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0
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382
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cn.mops : undef chromsome using data matrix as input
CNV cn.mops undef
3.7 years ago ankita.narang86 • 0
0
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0
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622
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cn.MOPS output - mean/median of what?
cn.MOPS CNV copy number
3.8 years ago liorglic ▴ 10
0
votes
1
reply
676
views
CNV plot using cn.mops
cnv R plot visualization cn.mops software error
4.0 years ago ari • 0
0
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0
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523
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ChrM causes "missing value where TRUE/FALSE needed" error
cn.mops
4.0 years ago millerh1 ▴ 10
0
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1
reply
730
views
Error using singlecn.mops for cnv detection in WGS data
cnv cn.mops singlecn.mops
updated 21 months ago by • 0 • written 4.1 years ago by • 0
0
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2
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910
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problem about using cn.mops
cn.mops
updated 2.5 years ago by • 0 • written 4.4 years ago by • 0
0
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3
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849
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
1
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4
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812
views
cn.mops on CRAM files
cn.mops
updated 4.5 years ago by ▴ 540 • written 4.5 years ago by • 0
2
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3
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1.1k
views
mosdepth output into cn.mops?
cn.mops
updated 4.7 years ago by ▴ 540 • written 4.7 years ago by • 0
0
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0
replies
557
views
cn.mops normalization of multiple samples
cn.mops
4.8 years ago DannyM • 0
0
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0
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817
views
Mean and median values in cn.mops cnvs output
cn.mops referencecn.mops
updated 4.9 years ago by 0 • written 5.0 years ago by • 0
0
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3
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812
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tumor vs control: multiple samples
cn.mops
4.9 years ago DannyM • 0
0
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1
reply
867
views
cn.MOPS: Error in getReadCountsFromBAM
cn.mops
5.2 years ago laurabuggiotti • 0
0
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0
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831
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
5.3 years ago Cased • 0
0
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0
replies
565
views
How to interpret out of referencecn.mops
referencecn.mops cn.mops
5.3 years ago eddie.kaho.ho • 0
0
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18
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4.0k
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cn.MOPs: Error in value[[3L]](cond) :
cn.mops
updated 5.4 years ago by ▴ 540 • written 5.4 years ago by • 0
2
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3
replies
1.3k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 5.4 years ago by ▴ 540 • written 5.4 years ago by • 0
0
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1
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756
views
cn.mops: interpreting output when returnPosterior=TRUE
cn.mops
updated 5.6 years ago by ▴ 540 • written 5.6 years ago by • 0
0
votes
2
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872
views
best way to normalize for differences in sample read depth: normalize genome vs cn.MOPs
cn.mops normalization
updated 8 months ago by • 0 • written 5.7 years ago by • 0
1
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2
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1.6k
views
cn.MOPS error: Error in if (WL >= sl[i]) { : missing value where TRUE/FALSE needed
cn.mops
5.8 years ago hugo.magalhaes ▴ 10
0
votes
1
reply
856
views
Inconsistent Warning: GRanges out of bounds
cn.mops granges trim Genomicranges-method
5.8 years ago znl207 • 0
0
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1
reply
785
views
Error with plotting with target sequencing data
cn.mops
updated 5.8 years ago by ▴ 540 • written 5.8 years ago by • 0
2
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5
replies
2.2k
views
Cn.mops error: Error in if (sum(rds.counts) == 0) { : missing value where TRUE/FALSE needed
software error cn.mops
5.9 years ago • updated 5.8 years ago daijieqiong ▴ 10
0
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5
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1.3k
views
Error when use getSegmentReadCountsFromBAM
targeted sequencing cn.mops
5.8 years ago jinxinhao1988 • 0
0
votes
2
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1.3k
views
cn.MOPs issue with "Error in if (all(segMedianT == 0))"
cn.mops cnv
updated 6.0 years ago by ▴ 540 • written 6.0 years ago by ▴ 20
0
votes
4
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1.1k
views
Is cn.mops can be used for detecting CNV for targeted sequencing of 8M region
cn.mops
updated 6.0 years ago by ▴ 540 • written 6.0 years ago by • 0
5
votes
7
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1.3k
views
about the runs with cn.mops
cn.mops referencecn.mops
6.3 years ago • updated 6.2 years ago Bogdan ▴ 670
1
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2
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1.4k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops log normalized counts table
updated 6.4 years ago by ▴ 540 • written 6.4 years ago by • 0
0
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1
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907
views
getReadCountsFromBAM including bed information
cn.mops bed files getReadCountsFromBAM
6.4 years ago Pau Marc Muñoz Torres ▴ 20
5
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9
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1.6k
views
reduce function after combining 2 GRanges objects from cn.mops output
GRanges cn.mops
updated 6.4 years ago by 11k • written 6.4 years ago by ▴ 110
2
votes
1
reply
924
views
How to combine CNVDetectionResult objects in cn.mops package
cn.mops
updated 6.4 years ago by ▴ 540 • written 6.4 years ago by ▴ 110
0
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2
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1.0k
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getReadCountsFromBAM and paired-end reads
cn.mops
6.5 years ago • updated 6.4 years ago Alexandre Kuhn ▴ 20
4
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2
replies
1.3k
views
using cn.MOPS on WES data GERMLINE-TUMOR
cn.mops
6.5 years ago • updated 6.4 years ago Bogdan ▴ 670
0
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2
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1.2k
views
Conflict in cnvr and cnvs result from cn.mops
cn.mops
updated 6.5 years ago by ▴ 540 • written 6.6 years ago by • 0
0
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4
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1.1k
views
cn.mops encounter negative width problem
cn.mops referencecn.mops
updated 6.6 years ago by ▴ 540 • written 6.6 years ago by • 0
3
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1
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1.0k
views
R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops referencecn.mops
updated 6.6 years ago by ▴ 540 • written 6.8 years ago by ▴ 670
3
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5
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1.4k
views
R code for cn.mops
cn.mops
updated 8 months ago by • 0 • written 6.8 years ago by ▴ 670
1
vote
1
reply
859
views
which cn.mops function should I use
cn.mops
updated 6.6 years ago by ▴ 540 • written 6.6 years ago by • 0
0
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1
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963
views
cn.mops returning only "NA" as copy number
cn.mops
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
0
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2
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1.3k
views
about an error in cn.MOPS : could not find symbol "recursive" in environment of the generic function
cn.MOPS
6.8 years ago Bogdan ▴ 670
4
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3
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1.2k
views
parameter "refSeqName" in function "getReadCountsFromBAM"
cn.mops
updated 6.8 years ago by ▴ 540 • written 7.3 years ago by • 0
0
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4
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1.2k
views
Call CNV in population with large depth variance
cn.mops
updated 6.9 years ago by ▴ 540 • written 6.9 years ago by • 0
4
votes
9
replies
2.2k
views
How to use cn.mops to detect CNVs from Targeted DNA Sequencing data?
cn.mops cnv targeted sequencing
updated 6.9 years ago by ▴ 540 • written 6.9 years ago by ▴ 20
0
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1
reply
740
views
Input (X) data type is not numeric if read from GRanges obj
cn.mops
updated 6.9 years ago by ▴ 540 • written 6.9 years ago by • 0
1
vote
2
replies
1.1k
views
cn.mops: NA in the output of referencecn.mops
cn.mops referencecn.mops
updated 7.0 years ago by ▴ 540 • written 7.0 years ago by ▴ 90
0
votes
2
replies
968
views
about cn.MOPS: paired vs unpaired
cn.mops
updated 7.1 years ago by ▴ 540 • written 7.1 years ago by ▴ 670
50 results • Page 1 of 1
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You should just use the quasi-likelihood pipeline, which controls type I error better than the exact test or likelihood ratio test.
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The workflow you reference was written in 2018, and hasn't been updated since 2020, except for version bumps (it's meant to parallel an F10…
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I have entered the picture only in the analysis stage - the sequencing has all been performed and done. > Besides, likely the noise level…
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It does look like CBP2 is an HGNC symbol, not a protein ID though. ``` > z <- select(ws, "CPB2", c("gene_names","xref_geneid","xref_ensemb…
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Hi Omer, Unfortunately I don't have an answer to your issue, but I am facing a very similar problem after integrating datasets that were …
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