Showing : cn.MOPS • reset
1
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2
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975
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" 'end' must be >= 'start' - 1" error in cn.mops
cn.mops
2.5 years ago User000 • 0
0
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3
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1.6k
views
cn.mops segmentation error
cn.mops
updated 2.6 years ago by • 0 • written 2.7 years ago by ▴ 40
0
votes
1
reply
717
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Suspected bug on GetReadCountsFromBAM in cn.mops
cn.mops
4.6 years ago asafpr • 0
0
votes
1
reply
914
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How to use panelcn.mops to detect CNVs from whole genome data by getting count windows from BED file?
cn.mops panelcn.mops CNV detection CNV
5.0 years ago metzgerlukas • 0
0
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0
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667
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cn.mops : undef chromsome using data matrix as input
CNV cn.mops undef
5.0 years ago ankita.narang86 • 0
0
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0
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942
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cn.MOPS output - mean/median of what?
cn.MOPS CNV copy number
5.1 years ago liorglic ▴ 10
0
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1
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1.0k
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CNV plot using cn.mops
cnv R plot visualization cn.mops software error
5.3 years ago ari • 0
0
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0
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775
views
ChrM causes "missing value where TRUE/FALSE needed" error
cn.mops
5.3 years ago millerh1 ▴ 10
0
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1
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1.1k
views
Error using singlecn.mops for cnv detection in WGS data
cnv cn.mops singlecn.mops
updated 3.0 years ago by • 0 • written 5.4 years ago by • 0
0
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2
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1.4k
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problem about using cn.mops
cn.mops
updated 3.8 years ago by • 0 • written 5.7 years ago by • 0
0
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3
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1.2k
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Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
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4
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1.2k
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cn.mops on CRAM files
cn.mops
updated 5.8 years ago by ▴ 540 • written 5.8 years ago by • 0
2
votes
3
replies
1.6k
views
mosdepth output into cn.mops?
cn.mops
updated 6.0 years ago by ▴ 540 • written 6.0 years ago by • 0
0
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0
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859
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cn.mops normalization of multiple samples
cn.mops
6.1 years ago DannyM • 0
0
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0
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1.2k
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Mean and median values in cn.mops cnvs output
cn.mops referencecn.mops
updated 6.2 years ago by 0 • written 6.3 years ago by • 0
0
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3
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1.2k
views
tumor vs control: multiple samples
cn.mops
6.2 years ago DannyM • 0
0
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1
reply
1.2k
views
cn.MOPS: Error in getReadCountsFromBAM
cn.mops
6.5 years ago laurabuggiotti • 0
0
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0
replies
1.2k
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
6.6 years ago Cased • 0
0
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0
replies
850
views
How to interpret out of referencecn.mops
referencecn.mops cn.mops
6.6 years ago eddie.kaho.ho • 0
0
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18
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5.5k
views
cn.MOPs: Error in value[[3L]](cond) :
cn.mops
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
2
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3
replies
1.8k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
0
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1
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1.2k
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cn.mops: interpreting output when returnPosterior=TRUE
cn.mops
updated 6.9 years ago by ▴ 540 • written 6.9 years ago by • 0
0
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2
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1.3k
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best way to normalize for differences in sample read depth: normalize genome vs cn.MOPs
cn.mops normalization
updated 2.0 years ago by • 0 • written 7.0 years ago by • 0
1
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2
replies
2.1k
views
cn.MOPS error: Error in if (WL >= sl[i]) { : missing value where TRUE/FALSE needed
cn.mops
7.1 years ago hugo.magalhaes ▴ 10
0
votes
1
reply
1.3k
views
Inconsistent Warning: GRanges out of bounds
cn.mops granges trim Genomicranges-method
7.1 years ago znl207 • 0
0
votes
1
reply
1.3k
views
Error with plotting with target sequencing data
cn.mops
updated 7.1 years ago by ▴ 540 • written 7.1 years ago by • 0
2
votes
6
replies
3.1k
views
Cn.mops error: Error in if (sum(rds.counts) == 0) { : missing value where TRUE/FALSE needed
software error cn.mops
updated 12 months ago by • 0 • written 7.2 years ago by ▴ 10
0
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5
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1.9k
views
Error when use getSegmentReadCountsFromBAM
targeted sequencing cn.mops
7.2 years ago jinxinhao1988 • 0
0
votes
2
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1.8k
views
cn.MOPs issue with "Error in if (all(segMedianT == 0))"
cn.mops cnv
updated 7.3 years ago by ▴ 540 • written 7.3 years ago by ▴ 20
0
votes
4
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1.7k
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Is cn.mops can be used for detecting CNV for targeted sequencing of 8M region
cn.mops
updated 7.3 years ago by ▴ 540 • written 7.3 years ago by • 0
5
votes
7
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1.9k
views
about the runs with cn.mops
cn.mops referencecn.mops
7.6 years ago • updated 7.5 years ago Bogdan ▴ 670
1
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2
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1.9k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops log normalized counts table
updated 7.7 years ago by ▴ 540 • written 7.7 years ago by • 0
0
votes
1
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1.3k
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getReadCountsFromBAM including bed information
cn.mops bed files getReadCountsFromBAM
7.7 years ago Pau Marc Muñoz Torres ▴ 20
5
votes
9
replies
2.3k
views
reduce function after combining 2 GRanges objects from cn.mops output
GRanges cn.mops
updated 7.7 years ago by ★ 11k • written 7.7 years ago by ▴ 110
2
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1
reply
1.3k
views
How to combine CNVDetectionResult objects in cn.mops package
cn.mops
updated 7.7 years ago by ▴ 540 • written 7.7 years ago by ▴ 110
0
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2
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1.4k
views
getReadCountsFromBAM and paired-end reads
cn.mops
7.8 years ago Alexandre Kuhn ▴ 20
4
votes
2
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1.7k
views
using cn.MOPS on WES data GERMLINE-TUMOR
cn.mops
7.8 years ago Bogdan ▴ 670
0
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2
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1.5k
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Conflict in cnvr and cnvs result from cn.mops
cn.mops
updated 7.8 years ago by ▴ 540 • written 7.9 years ago by • 0
0
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4
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1.6k
views
cn.mops encounter negative width problem
cn.mops referencecn.mops
updated 7.9 years ago by ▴ 540 • written 7.9 years ago by • 0
3
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1
reply
1.4k
views
R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops referencecn.mops
updated 7.9 years ago by ▴ 540 • written 8.1 years ago by ▴ 670
3
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5
replies
1.9k
views
R code for cn.mops
cn.mops
updated 2.0 years ago by • 0 • written 8.1 years ago by ▴ 670
1
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1
reply
1.2k
views
which cn.mops function should I use
cn.mops
updated 7.9 years ago by ▴ 540 • written 7.9 years ago by • 0
0
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1
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1.3k
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cn.mops returning only "NA" as copy number
cn.mops
updated 8.0 years ago by ▴ 540 • written 8.0 years ago by • 0
0
votes
2
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1.6k
views
about an error in cn.MOPS : could not find symbol "recursive" in environment of the generic function
cn.MOPS
8.1 years ago Bogdan ▴ 670
4
votes
3
replies
1.6k
views
parameter "refSeqName" in function "getReadCountsFromBAM"
cn.mops
updated 8.1 years ago by ▴ 540 • written 8.6 years ago by • 0
0
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4
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1.7k
views
Call CNV in population with large depth variance
cn.mops
updated 8.2 years ago by ▴ 540 • written 8.2 years ago by • 0
4
votes
9
replies
2.8k
views
How to use cn.mops to detect CNVs from Targeted DNA Sequencing data?
cn.mops cnv targeted sequencing
updated 8.2 years ago by ▴ 540 • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Input (X) data type is not numeric if read from GRanges obj
cn.mops
updated 8.2 years ago by ▴ 540 • written 8.2 years ago by • 0
1
vote
2
replies
1.5k
views
cn.mops: NA in the output of referencecn.mops
cn.mops referencecn.mops
updated 8.3 years ago by ▴ 540 • written 8.3 years ago by ▴ 90
0
votes
2
replies
1.3k
views
about cn.MOPS: paired vs unpaired
cn.mops
updated 8.4 years ago by ▴ 540 • written 8.4 years ago by ▴ 670
50 results • Page 1 of 1
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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k
I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10
Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…
Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0
Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …
Comment: Clarification on GOALL / GO2ALLORFs mapping by DavideSant • 0
Thank you for your answer James. I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…
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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using TPM from tximport of Salmon output for singscore
Comment: Using TPM from tximport of Salmon output for singscore
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