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cn.MOPS
•
reset
1
vote
2
replies
697
views
" 'end' must be >= 'start' - 1" error in cn.mops
cn.mops
19 months ago
User000
• 0
0
votes
3
replies
1.2k
views
cn.mops segmentation error
cn.mops
updated 20 months ago by
gpovysil
• 0 • written 21 months ago by
jacorvar
▴ 40
0
votes
1
reply
554
views
Suspected bug on GetReadCountsFromBAM in cn.mops
cn.mops
3.7 years ago
asafpr
• 0
0
votes
1
reply
711
views
How to use panelcn.mops to detect CNVs from whole genome data by getting count windows from BED file?
cn.mops
panelcn.mops
CNV detection
CNV
4.1 years ago
metzgerlukas
• 0
0
votes
0
replies
459
views
cn.mops : undef chromsome using data matrix as input
CNV
cn.mops
undef
4.1 years ago
ankita.narang86
• 0
0
votes
0
replies
738
views
cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
4.2 years ago
liorglic
▴ 10
0
votes
1
reply
760
views
CNV plot using cn.mops
cnv
R
plot visualization
cn.mops
software error
4.4 years ago
ari
• 0
0
votes
0
replies
602
views
ChrM causes "missing value where TRUE/FALSE needed" error
cn.mops
4.4 years ago
millerh1
▴ 10
0
votes
1
reply
840
views
Error using singlecn.mops for cnv detection in WGS data
cnv
cn.mops
singlecn.mops
updated 2.1 years ago by
SicilianSilicon
• 0 • written 4.4 years ago by
frez111
• 0
0
votes
2
replies
1.1k
views
problem about using cn.mops
cn.mops
updated 2.9 years ago by
R
• 0 • written 4.8 years ago by
hzaujsxu
• 0
0
votes
3
replies
950
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops
cn.mops
error
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
s1812756
• 0
1
vote
4
replies
916
views
cn.mops on CRAM files
cn.mops
updated 4.9 years ago by
Günter Klambauer
▴ 540 • written 4.9 years ago by
dsilencio
• 0
2
votes
3
replies
1.2k
views
mosdepth output into cn.mops?
cn.mops
updated 5.1 years ago by
Günter Klambauer
▴ 540 • written 5.1 years ago by
Philipp Bayer
• 0
0
votes
0
replies
649
views
cn.mops normalization of multiple samples
cn.mops
5.2 years ago
DannyM
• 0
0
votes
0
replies
929
views
Mean and median values in cn.mops cnvs output
cn.mops
referencecn.mops
updated 5.3 years ago by
Bioconductor Community
0 • written 5.3 years ago by
kaushalm
• 0
0
votes
3
replies
932
views
tumor vs control: multiple samples
cn.mops
5.3 years ago
DannyM
• 0
0
votes
1
reply
957
views
cn.MOPS: Error in getReadCountsFromBAM
cn.mops
5.6 years ago
laurabuggiotti
• 0
0
votes
0
replies
943
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops
dnaseq
bioinformatics
5.7 years ago
Cased
• 0
0
votes
0
replies
658
views
How to interpret out of referencecn.mops
referencecn.mops
cn.mops
5.7 years ago
eddie.kaho.ho
• 0
0
votes
18
replies
4.4k
views
cn.MOPs: Error in value[[3L]](cond) :
cn.mops
updated 5.8 years ago by
Günter Klambauer
▴ 540 • written 5.8 years ago by
laurabuggiotti
• 0
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 5.8 years ago by
Günter Klambauer
▴ 540 • written 5.8 years ago by
Cased
• 0
0
votes
1
reply
869
views
cn.mops: interpreting output when returnPosterior=TRUE
cn.mops
updated 6.0 years ago by
Günter Klambauer
▴ 540 • written 6.0 years ago by
laurabuggiotti
• 0
0
votes
2
replies
997
views
best way to normalize for differences in sample read depth: normalize genome vs cn.MOPs
cn.mops
normalization
updated 13 months ago by
yr542
• 0 • written 6.1 years ago by
znl207
• 0
1
vote
2
replies
1.8k
views
cn.MOPS error: Error in if (WL >= sl[i]) { : missing value where TRUE/FALSE needed
cn.mops
6.2 years ago
hugo.magalhaes
▴ 10
0
votes
1
reply
984
views
Inconsistent Warning: GRanges out of bounds
cn.mops
granges
trim
Genomicranges-method
6.2 years ago
znl207
• 0
0
votes
1
reply
941
views
Error with plotting with target sequencing data
cn.mops
updated 6.2 years ago by
Günter Klambauer
▴ 540 • written 6.2 years ago by
jinxinhao1988
• 0
2
votes
6
replies
2.5k
views
Cn.mops error: Error in if (sum(rds.counts) == 0) { : missing value where TRUE/FALSE needed
software error
cn.mops
updated 6 weeks ago by
ama304374
• 0 • written 6.3 years ago by
daijieqiong
▴ 10
0
votes
5
replies
1.4k
views
Error when use getSegmentReadCountsFromBAM
targeted sequencing
cn.mops
6.2 years ago
jinxinhao1988
• 0
0
votes
2
replies
1.4k
views
cn.MOPs issue with "Error in if (all(segMedianT == 0))"
cn.mops
cnv
updated 6.3 years ago by
Günter Klambauer
▴ 540 • written 6.3 years ago by
martyferr90
▴ 20
0
votes
4
replies
1.3k
views
Is cn.mops can be used for detecting CNV for targeted sequencing of 8M region
cn.mops
updated 6.4 years ago by
Günter Klambauer
▴ 540 • written 6.4 years ago by
iszhucy
• 0
5
votes
7
replies
1.5k
views
about the runs with cn.mops
cn.mops
referencecn.mops
6.6 years ago
Bogdan
▴ 670
1
vote
2
replies
1.6k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 6.7 years ago by
Günter Klambauer
▴ 540 • written 6.7 years ago by
falk.zakrzewski
• 0
0
votes
1
reply
1.0k
views
getReadCountsFromBAM including bed information
cn.mops
bed files
getReadCountsFromBAM
6.8 years ago
Pau Marc Muñoz Torres
▴ 20
5
votes
9
replies
1.8k
views
reduce function after combining 2 GRanges objects from cn.mops output
GRanges
cn.mops
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
Haiying.Kong
▴ 110
2
votes
1
reply
1.0k
views
How to combine CNVDetectionResult objects in cn.mops package
cn.mops
updated 6.8 years ago by
Günter Klambauer
▴ 540 • written 6.8 years ago by
Haiying.Kong
▴ 110
0
votes
2
replies
1.1k
views
getReadCountsFromBAM and paired-end reads
cn.mops
6.9 years ago • updated 6.8 years ago
Alexandre Kuhn
▴ 20
4
votes
2
replies
1.4k
views
using cn.MOPS on WES data GERMLINE-TUMOR
cn.mops
6.8 years ago
Bogdan
▴ 670
0
votes
2
replies
1.3k
views
Conflict in cnvr and cnvs result from cn.mops
cn.mops
updated 6.9 years ago by
Günter Klambauer
▴ 540 • written 6.9 years ago by
thestaroceanster
• 0
0
votes
4
replies
1.3k
views
cn.mops encounter negative width problem
cn.mops
referencecn.mops
updated 7.0 years ago by
Günter Klambauer
▴ 540 • written 7.0 years ago by
thestaroceanster
• 0
3
votes
1
reply
1.1k
views
R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops
referencecn.mops
updated 7.0 years ago by
Günter Klambauer
▴ 540 • written 7.2 years ago by
Bogdan
▴ 670
3
votes
5
replies
1.5k
views
R code for cn.mops
cn.mops
updated 13 months ago by
yr542
• 0 • written 7.2 years ago by
Bogdan
▴ 670
1
vote
1
reply
958
views
which cn.mops function should I use
cn.mops
updated 7.0 years ago by
Günter Klambauer
▴ 540 • written 7.0 years ago by
thestaroceanster
• 0
0
votes
1
reply
1.0k
views
cn.mops returning only "NA" as copy number
cn.mops
updated 7.1 years ago by
Günter Klambauer
▴ 540 • written 7.1 years ago by
rc16955
• 0
0
votes
2
replies
1.4k
views
about an error in cn.MOPS : could not find symbol "recursive" in environment of the generic function
cn.MOPS
7.2 years ago
Bogdan
▴ 670
4
votes
3
replies
1.3k
views
parameter "refSeqName" in function "getReadCountsFromBAM"
cn.mops
updated 7.2 years ago by
Günter Klambauer
▴ 540 • written 7.7 years ago by
Mohammad Alkhamis
• 0
0
votes
4
replies
1.4k
views
Call CNV in population with large depth variance
cn.mops
updated 7.3 years ago by
Günter Klambauer
▴ 540 • written 7.3 years ago by
Xiao Zhang
• 0
4
votes
9
replies
2.3k
views
How to use cn.mops to detect CNVs from Targeted DNA Sequencing data?
cn.mops
cnv
targeted sequencing
updated 7.3 years ago by
Günter Klambauer
▴ 540 • written 7.3 years ago by
Bouzid.a
▴ 20
0
votes
1
reply
833
views
Input (X) data type is not numeric if read from GRanges obj
cn.mops
updated 7.3 years ago by
Günter Klambauer
▴ 540 • written 7.3 years ago by
Mohammad Alkhamis
• 0
1
vote
2
replies
1.2k
views
cn.mops: NA in the output of referencecn.mops
cn.mops
referencecn.mops
updated 7.4 years ago by
Günter Klambauer
▴ 540 • written 7.4 years ago by
Radek
▴ 90
0
votes
2
replies
1.1k
views
about cn.MOPS: paired vs unpaired
cn.mops
updated 7.4 years ago by
Günter Klambauer
▴ 540 • written 7.4 years ago by
Bogdan
▴ 670
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