Showing : crlmm • reset
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genotyping output files
PROcess SNPchip crlmm PROcess SNPchip crlmm
13.8 years ago Rafiq S. ▴ 20
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1.5k
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Analysis with SnpSet object CRLMM package
crlmm crlmm
updated 14.0 years ago by ★ 4.3k • written 14.0 years ago by ▴ 70
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Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
14.1 years ago Benilton Carvalho ★ 4.3k
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Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm
14.1 years ago Daniel Rico ▴ 110
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1
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1.2k
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CRLMM warning message and null results
crlmm crlmm
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 10
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885
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Tumor and Normal samples copy number estimation with CRLMM
crlmm crlmm
14.5 years ago Sole Acha, Xavi ▴ 110
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2
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1.3k
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crlmm error in Mac OS
oligo crlmm oligo crlmm
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 10
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1
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1.6k
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crlmm - Infinium iSelect HD Custom Genotyping
SNP beadarray crlmm SNP beadarray crlmm
updated 14.9 years ago by ▴ 1000 • written 14.9 years ago by ▴ 20
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CRLMM calls to forward strand genotypes?
Annotation convert crlmm Annotation convert crlmm
14.9 years ago wrighth ▴ 260
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Illumina CanineHD CNV & crlmm?
GO HapMap cdf affy crlmm GO HapMap cdf affy crlmm
14.9 years ago Matthew Ritchie ▴ 1000
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Illumina CanineHD CNV & crlmm?
GO cdf affy crlmm GO cdf affy crlmm
15.0 years ago Dykema, Karl ▴ 90
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850
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update of crlmm package in BioC 2.7
crlmm crlmm
15.0 years ago Rob Scharpf ▴ 250
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1
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1.3k
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crlmm package and allele-specific CNV with Illumina SNP arrays
SNP crlmm SNP crlmm
updated 15.1 years ago by ▴ 250 • written 15.1 years ago by ▴ 20
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2
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Question on copy number estimation for Affymetrix SNP array 100k and 500k
SNP crlmm genoCN SNP crlmm genoCN
updated 15.1 years ago by ★ 2.4k • written 15.1 years ago by ★ 4.3k
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3
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Oligo package crlmm method
SNP oligo crlmm SNP oligo crlmm
updated 15.2 years ago by ★ 4.3k • written 15.2 years ago by ★ 4.3k
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3
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1.9k
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crlmm and cluster centres error
crlmm crlmm
updated 15.2 years ago by ★ 4.3k • written 15.2 years ago by ▴ 50
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1
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1.7k
views
beadarray illumina Human610-Quadv1_B.bpm
crlmm crlmm
updated 15.3 years ago by ▴ 1000 • written 15.3 years ago by ▴ 80
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1
reply
2.4k
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Reading Illumina IDAT files
crlmm crlmm
updated 15.4 years ago by ▴ 1000 • written 15.4 years ago by ▴ 910
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5
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1.8k
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crlmm package help for copy number affymetrix snp 6.0
SNP crlmm SNP crlmm
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 60
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1
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988
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(no subject)
crlmm crlmm
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ▴ 60
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1
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1.1k
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crlmm and snpMatrix
snpMatrix crlmm snpMatrix crlmm
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 270
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2
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1.3k
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pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 100
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package to handle Infinium iSelect HD Custom Genotyping
SNP Normalization crlmm SNP Normalization crlmm
15.6 years ago Ramzi TEMANNI ▴ 160
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1
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1.1k
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Interpretation of genotype calls from Oligo crlmm algorithm
SNP oligo crlmm SNP oligo crlmm
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 150
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6
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1.9k
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QC Affy 6.0 SNP arrays with crlmm or Oligo?
Normalization oligo crlmm Normalization oligo crlmm
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 150
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1
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1.4k
views
crlmm with Illumina arrays
crlmm crlmm
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 480
0
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7
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2.0k
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problem to compute copy number with crlmm
GLAD crlmm GLAD crlmm
updated 16.0 years ago by ▴ 250 • written 16.0 years ago by ▴ 40
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Does CRLMM uses mismatched features?
SNP probe crlmm SNP probe crlmm
16.4 years ago mcoyne@boninc.com ▴ 50
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3
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1.8k
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Error: All CEL files must be of the same type when running CRLMM
SNP crlmm SNP crlmm
updated 16.4 years ago by 6.7k • written 16.4 years ago by ▴ 50
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1
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1.0k
views
Error using crlmm
Normalization affy crlmm Normalization affy crlmm
updated 16.4 years ago by ★ 4.3k • written 16.4 years ago by ▴ 50
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0
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1.6k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.5 years ago Min-Han Tan ▴ 40
0
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1
reply
1.8k
views
crlmm and Illumina Infinium arrays
crlmm crlmm
updated 16.5 years ago by ▴ 1000 • written 16.5 years ago by ▴ 170
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2
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1.1k
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crlmm - computeCopynumber error
crlmm crlmm
updated 16.5 years ago by ▴ 250 • written 16.6 years ago by ▴ 170
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1
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1.4k
views
(CRLMM) an issue needs to be clarified
SNP affy crlmm SNP affy crlmm
16.7 years ago Ping-Hsun Hsieh ▴ 30
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1
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1.3k
views
about: analyze 250K sty SNP array
crlmm crlmm
updated 17.1 years ago by ★ 2.4k • written 17.1 years ago by ▴ 10
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3
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1.0k
views
How to use CRLMM with Affy 5.0 arrays
crlmm crlmm
updated 17.2 years ago by ★ 4.3k • written 17.2 years ago by ▴ 20
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verification
GO limma impute oligo makePlatformDesign crlmm GO limma impute oligo makePlatformDesign
18.7 years ago Vasiliki Xiarchou ▴ 10
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8
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2.0k
views
crlmm warning
oligo crlmm oligo crlmm
updated 18.7 years ago by ★ 4.3k • written 18.7 years ago by ▴ 190
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2
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views
"oligo" crashes in windows XP
SNP GO affyio oligo crlmm SNP GO affyio oligo crlmm
updated 18.8 years ago by ★ 4.3k • written 18.8 years ago by ▴ 190
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Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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