Showing : crlmm • reset
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genotyping output files
PROcess SNPchip crlmm PROcess SNPchip crlmm
13.7 years ago Rafiq S. ▴ 20
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1.5k
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Analysis with SnpSet object CRLMM package
crlmm crlmm
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ▴ 70
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Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
13.9 years ago Benilton Carvalho ★ 4.3k
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Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm
14.0 years ago Daniel Rico ▴ 110
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CRLMM warning message and null results
crlmm crlmm
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ▴ 10
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Tumor and Normal samples copy number estimation with CRLMM
crlmm crlmm
14.3 years ago Sole Acha, Xavi ▴ 110
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2
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1.3k
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crlmm error in Mac OS
oligo crlmm oligo crlmm
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 10
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1
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1.5k
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crlmm - Infinium iSelect HD Custom Genotyping
SNP beadarray crlmm SNP beadarray crlmm
updated 14.7 years ago by ▴ 1000 • written 14.8 years ago by ▴ 20
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CRLMM calls to forward strand genotypes?
Annotation convert crlmm Annotation convert crlmm
14.8 years ago wrighth ▴ 260
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Illumina CanineHD CNV & crlmm?
GO HapMap cdf affy crlmm GO HapMap cdf affy crlmm
14.8 years ago Matthew Ritchie ▴ 1000
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Illumina CanineHD CNV & crlmm?
GO cdf affy crlmm GO cdf affy crlmm
14.8 years ago Dykema, Karl ▴ 90
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840
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update of crlmm package in BioC 2.7
crlmm crlmm
14.8 years ago Rob Scharpf ▴ 250
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1
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1.3k
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crlmm package and allele-specific CNV with Illumina SNP arrays
SNP crlmm SNP crlmm
updated 15.0 years ago by ▴ 250 • written 15.0 years ago by ▴ 20
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2
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Question on copy number estimation for Affymetrix SNP array 100k and 500k
SNP crlmm genoCN SNP crlmm genoCN
updated 15.0 years ago by ★ 2.4k • written 15.0 years ago by ★ 4.3k
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Oligo package crlmm method
SNP oligo crlmm SNP oligo crlmm
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ★ 4.3k
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3
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1.9k
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crlmm and cluster centres error
crlmm crlmm
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ▴ 50
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1
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1.6k
views
beadarray illumina Human610-Quadv1_B.bpm
crlmm crlmm
updated 15.2 years ago by ▴ 1000 • written 15.2 years ago by ▴ 80
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2.4k
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Reading Illumina IDAT files
crlmm crlmm
updated 15.2 years ago by ▴ 1000 • written 15.2 years ago by ▴ 910
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5
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1.8k
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crlmm package help for copy number affymetrix snp 6.0
SNP crlmm SNP crlmm
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 60
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970
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(no subject)
crlmm crlmm
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 60
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1
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crlmm and snpMatrix
snpMatrix crlmm snpMatrix crlmm
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 270
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2
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1.3k
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pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 100
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package to handle Infinium iSelect HD Custom Genotyping
SNP Normalization crlmm SNP Normalization crlmm
15.4 years ago Ramzi TEMANNI ▴ 160
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1
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1.1k
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Interpretation of genotype calls from Oligo crlmm algorithm
SNP oligo crlmm SNP oligo crlmm
updated 15.4 years ago by ★ 4.3k • written 15.5 years ago by ▴ 150
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1.9k
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QC Affy 6.0 SNP arrays with crlmm or Oligo?
Normalization oligo crlmm Normalization oligo crlmm
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ▴ 150
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1
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1.4k
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crlmm with Illumina arrays
crlmm crlmm
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 480
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7
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1.9k
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problem to compute copy number with crlmm
GLAD crlmm GLAD crlmm
updated 15.9 years ago by ▴ 250 • written 15.9 years ago by ▴ 40
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Does CRLMM uses mismatched features?
SNP probe crlmm SNP probe crlmm
16.2 years ago mcoyne@boninc.com ▴ 50
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3
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1.7k
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Error: All CEL files must be of the same type when running CRLMM
SNP crlmm SNP crlmm
updated 16.2 years ago by 6.7k • written 16.2 years ago by ▴ 50
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1
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991
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Error using crlmm
Normalization affy crlmm Normalization affy crlmm
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 50
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1.6k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.4 years ago Min-Han Tan ▴ 40
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1
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1.8k
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crlmm and Illumina Infinium arrays
crlmm crlmm
updated 16.4 years ago by ▴ 1000 • written 16.4 years ago by ▴ 170
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2
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1.1k
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crlmm - computeCopynumber error
crlmm crlmm
updated 16.4 years ago by ▴ 250 • written 16.4 years ago by ▴ 170
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1
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1.3k
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(CRLMM) an issue needs to be clarified
SNP affy crlmm SNP affy crlmm
16.6 years ago • updated 16.5 years ago Ping-Hsun Hsieh ▴ 30
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1.3k
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about: analyze 250K sty SNP array
crlmm crlmm
updated 16.9 years ago by ★ 2.4k • written 16.9 years ago by ▴ 10
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3
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990
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How to use CRLMM with Affy 5.0 arrays
crlmm crlmm
updated 17.1 years ago by ★ 4.3k • written 17.1 years ago by ▴ 20
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verification
GO limma impute oligo makePlatformDesign crlmm GO limma impute oligo makePlatformDesign
18.5 years ago Vasiliki Xiarchou ▴ 10
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1.9k
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crlmm warning
oligo crlmm oligo crlmm
updated 18.5 years ago by ★ 4.3k • written 18.5 years ago by ▴ 190
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"oligo" crashes in windows XP
SNP GO affyio oligo crlmm SNP GO affyio oligo crlmm
updated 18.7 years ago by ★ 4.3k • written 18.7 years ago by ▴ 190
89 results • Page 2 of 2
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Answer: replace cat with message in glmTreat when lfc = 0 by Gordon Smyth 53k
Yes, I agree that the message should be a `message` rather than `cat` output, and the message is perhaps not needed at all, because anyone …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
How did you make this plot? I've never seen an MDS plot from limma/edgeR with axis scale going from -200 to 200. Personally, I would go ah…
Comment: readDNAStringSet with non DNA characters by biomiha ▴ 20
DECIPHER does the trick, thank you!
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k
It may not be that common for bulk RNA-Seq, but in my experience it's very common for bulk miRNA-Seq.
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Nice. That's great to hear. `sva` was actually the next step I was planning to try. My colleagues haven't seen this kind of pattern before …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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