Bioconductor Customcdf

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gcrma CustomCDF Affyhgu133aExpr limma affy

updated 24 months ago by James W. MacDonald 68k • written 2.0 years ago by Pratik Mehta ▴ 10

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justrma customCDF segfault

updated 6.2 years ago by Daniel ▴ 10 • written 9.4 years ago by maria.lehtivaara • 0

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customcdf affymetrix microarrays hgu133plus2 affy

7.3 years ago rahil ▴ 30

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1.8k

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oligo brainarray rma customcdf

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by lcordeiro • 0

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hta customcdf

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by pbachali ▴ 50

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customcdf R microarray

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by 12021560-002 • 0

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customcdf

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by 12021560-002 • 0

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oligo pdinfobuilder pd.mogene.1.1.st customcdf

updated 8.5 years ago by James W. MacDonald 68k • written 9.0 years ago by Guido Hooiveld ★ 4.1k

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sva ComBat customcdf affymetrix microarrays limma

9.2 years ago svlachavas ▴ 840

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microarray oligo cdf customcdf

updated 9.4 years ago by Guido Hooiveld ★ 4.1k • written 9.4 years ago by Nathaniel ▴ 20

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oligo customcdf HTA frma

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by sanj ▴ 20

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affy oligo customcdf

10.4 years ago • updated 10.0 years ago rishi.dasroy ▴ 20

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Annotation GO CustomCDF cdf gcrma Annotation GO CustomCDF cdf gcrma

updated 15.3 years ago by James W. MacDonald 68k • written 15.4 years ago by Yair Benita ▴ 80

13 results • Page 1 of 1

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Answer: Log2foldchange strange behavior by ATpoint ★ 4.8k

The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…

Comment: DeSeq Strategies for run to run Replication by i.c.denhond • 0

Dear Michael, could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …

Comment: Log2foldchange strange behavior by RambakKulit • 0

Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…

Comment: Log2foldchange strange behavior by ATpoint ★ 4.8k

This cannot be answered here like this. Your results tables are not direct DESeq2 output, maybe it's a merging error during generation of t…

Comment: RE:proper pooling design by bicecac533 • 0

I look forward to reading more articles like this! [Stickman Boost][1] [1]: https://stickmanboost.com

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Answer: Enhanced Volcano Error when drawing connectors

Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

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