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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
8.6 years ago sunil.mangalam • 0
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2.5k
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Input file of NGS data for Pathview
rnaseq pathview data visualization
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ▴ 10
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1.9k
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Using pathview with uncommon species leads to Errors
pathview Kegg rnaseq data visualization
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by • 0
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1
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1.9k
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Pathview: visualization of data
pathview data visualization
updated 8.1 years ago by ★ 1.6k • written 8.2 years ago by ★ 3.9k
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1.6k
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Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
8.5 years ago Doe, Aimee ▴ 40
1
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1.1k
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science data visualization machine learning cancer Job
6.0 years ago • updated 5.9 years ago Shamith.Samarajiwa ▴ 180
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Visualize FlowSet by Date
FlowSet data visualization cellcounts
6.9 years ago Maria • 0
4
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3
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705
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RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2 RNA-Seq uniform distribution data visualization
updated 4.1 years ago by ★ 13k • written 4.1 years ago by ▴ 20
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1
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617
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DNA Deferential metheylation
data visualization
7.4 years ago tarek_2050 • 0
0
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0
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454
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how to construct mds plot of differentially expressed genes?
differentially expressed genes mds plot data visualization
5.1 years ago pratikshasharma47 • 0
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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