Showing : dataimport • reset
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Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 3.0 years ago by 58k • written 3.0 years ago by ▴ 20
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2
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599
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Data format for package "edge"
dataimport data handling
updated 5.5 years ago by 58k • written 5.5 years ago by • 0
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1.1k
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Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
6.4 years ago H.H. • 0
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2
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2.6k
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failure in GDS2eSet() in package GEOquery
Microarray OneChannel TwoChannel DataImport bridge GEOquery Microarray OneChannel bridge
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 290
4 results • Page 1 of 1
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Answer: Error in makeTxDbFromGFF(txomeInfo$gtf) by Michael Love 34k
I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Gordon Smyth 43k
You need to start by doing an ordinary paired analysis.
Comment: Recalculated abundance data output table with DEseq2 by Michael Love 34k
Yes, DESeq() then results(). When you print the table it will say MLE. No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2 by michael.morash • 0
Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
Votes
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
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