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dba
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1.2k
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DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
4.1 years ago
opheevallee
• 0
0
votes
1
reply
1.9k
views
DiffBind dba error
DiffBind
dba
R
error
updated 6.4 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
annika-helverson
• 0
3
votes
3
replies
5.4k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
7.8 years ago
maria.kondili
▴ 10
0
votes
0
replies
1.5k
views
How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer
deseq2
edger
CONDITIONS
DBA
8.0 years ago
arcucamila
• 0
3
votes
7
replies
2.8k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 8.1 years ago by
Rory Stark
★ 5.2k • written 8.1 years ago by
sylvia
▴ 10
0
votes
1
reply
1.7k
views
can't find function "dba" in DiffBind
DiffBind
dba
package installation
9.2 years ago
rebecca.spokony
• 0
1
vote
16
replies
5.0k
views
Error: could not find function "dba"
software error
diffbind
dba
9.2 years ago
mmarins
• 0
7 results • Page
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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