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dba
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DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
2.5 years ago
opheevallee
• 0
0
votes
1
reply
1.4k
views
DiffBind dba error
DiffBind
dba
R
error
updated 4.8 years ago by
Rory Stark
★ 5.2k • written 5.0 years ago by
annika-helverson
• 0
3
votes
3
replies
4.2k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
6.2 years ago
maria.kondili
▴ 10
0
votes
0
replies
1.1k
views
How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer
deseq2
edger
CONDITIONS
DBA
6.4 years ago
arcucamila
• 0
3
votes
7
replies
2.0k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 6.5 years ago by
Rory Stark
★ 5.2k • written 6.5 years ago by
sylvia
▴ 10
0
votes
1
reply
1.3k
views
can't find function "dba" in DiffBind
DiffBind
dba
package installation
7.6 years ago
rebecca.spokony
• 0
1
vote
16
replies
3.8k
views
Error: could not find function "dba"
software error
diffbind
dba
7.6 years ago
mmarins
• 0
7 results • Page
1 of 1
Recent ...
Replies
Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
A: dream vignette says limma-voom repeated measures two-group comparison needs two
Answer: Get the latest gene name from Entrez ID
Get the latest gene name from Entrez ID
Answer: biomaRt not working - lazy table error
Answer: How to do DESeq2 on Kallisto Data
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