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355

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DESeqDataSetFromMatrix dds DESeq2

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by naomi.croft • 0

votes

480

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by Enzo.Scifo • 0

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1.2k

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deseq2 cooks distance dds

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by ipso • 0

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1.0k

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deseq2 dds RPKM

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by harry.horsnell.17 • 0

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5.0k

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deseq2 DDS

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by rrcutler ▴ 70

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4.8k

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Deseq2 dds confounders

updated 8.4 years ago by Michael Love 42k • written 8.4 years ago by colaneri ▴ 30

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2.3k

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deseq2 rld pheatmap dds

updated 6.5 years ago by Michael Love 42k • written 8.7 years ago by rahel14350 ▴ 10

7 results • Page 1 of 1

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Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180