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decidetests
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2
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5
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3.1k
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How to use q.value cutt off in "decideTests" function for RNAseq differential expression analysis
rnaseq
decideTests
limma
qvalue
8.9 years ago
anver
• 0
3
votes
2
replies
779
views
Is it ok to use decideTests on linearly dependent contrasts?
limma
decidetests
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
Ryan C. Thompson
★ 7.9k
3
votes
4
replies
974
views
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
limma
decidetests
updated 7.5 years ago by
Gordon Smyth
50k • written 7.5 years ago by
ahmed.asadik
• 0
4
votes
5
replies
5.0k
views
decideTests() options in LIMMA
limma
B stats
decideTests
updated 21 months ago by
krushnach80
• 0 • written 9.1 years ago by
Elsa
• 0
5
votes
6
replies
1.5k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
mikhael.manurung
▴ 270
4
votes
4
replies
1.3k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 5.3 years ago by
Koen Van den Berge
▴ 180 • written 5.3 years ago by
maltethodberg
▴ 180
0
votes
2
replies
755
views
decideTests vs topTable results
decideTests
topTable
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
Anna
▴ 20
0
votes
5
replies
1.2k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
irene.roman
• 0
0
votes
1
reply
613
views
Decidetest results summary different from results written as .csv file
edgeR
voom
decidetests
DEG
updated 13 months ago by
Gordon Smyth
50k • written 13 months ago by
Ankita
• 0
3
votes
1
reply
1.3k
views
Limma -decideTests interpretation for M-values
limma
decidetests
methylation
updated 8.2 years ago by
Sean Davis
21k • written 8.2 years ago by
kraiczy
▴ 10
1
vote
3
replies
1.6k
views
limma decideTests results; how to get/sort most significant Genes?
limma
decidetests
updated 7.6 years ago by
Axel Klenk
★ 1.0k • written 7.6 years ago by
bi_Scholar
• 0
1
vote
2
replies
1.2k
views
limma decideTests global method with multiple groups
limma
decidetests
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
jamie.gearing
▴ 60
12 results • Page
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
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James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
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Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
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James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
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