Bioconductor DesignMatrix

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731

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limma DifferentialExpression Designmatrix

12 months ago Tadeoye ▴ 20

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581

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DESeq2 Designmatrix limma

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by Neha • 0

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subsettingdata edgeR designmatrix

updated 20 months ago by Gordon Smyth 53k • written 20 months ago by prity6459 • 0

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607

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limma designmatrix

updated 20 months ago by Gordon Smyth 53k • written 20 months ago by avery • 0

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by aditya.m ▴ 10

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1.9k

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R designmatrix edgeR limma model.matrix

3.0 years ago Abdul ▴ 20

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2.1k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 4.2 years ago by Gordon Smyth 53k • written 4.2 years ago by rebecca.lea.johnston • 0

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1.7k

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designmatrix deseq2 DESeq2

updated 4.2 years ago by swbarnes2 ★ 1.4k • written 4.2 years ago by OST • 0

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1.7k

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designmatrix RNA-seq limma

updated 4.7 years ago by Gordon Smyth 53k • written 4.7 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

4.8 years ago nageshprabhu.k ▴ 10

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1.5k

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MutlipleFactors DesignMatrix edgeR

4.9 years ago Debayan ▴ 20

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1.6k

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edgeR pairedsamples designmatrix

4.9 years ago sfidemw • 0

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1.2k

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deseq2 miRNASeq designmatrix Batch

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by anshulmbi • 0

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1.3k

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edger r differentialanalysis rnaseq designmatrix

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Beginner ▴ 60

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1.7k

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Limma designMatrix

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by Keifa ▴ 10

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1.9k

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limma microarray designmatrix

updated 9.4 years ago by Aaron Lun ★ 29k • written 9.4 years ago by nashchem • 0

16 results • Page 1 of 1

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Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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