Bioconductor DesignMatrix

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limma DifferentialExpression Designmatrix

10 months ago Tadeoye ▴ 20

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DESeq2 Designmatrix limma

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by Neha • 0

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924

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subsettingdata edgeR designmatrix

updated 18 months ago by Gordon Smyth 53k • written 18 months ago by prity6459 • 0

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limma designmatrix

updated 18 months ago by Gordon Smyth 53k • written 18 months ago by avery • 0

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by aditya.m ▴ 10

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R designmatrix edgeR limma model.matrix

2.9 years ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 4.0 years ago by Gordon Smyth 53k • written 4.0 years ago by rebecca.lea.johnston • 0

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designmatrix deseq2 DESeq2

updated 4.0 years ago by swbarnes2 ★ 1.4k • written 4.0 years ago by OST • 0

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designmatrix RNA-seq limma

updated 4.6 years ago by Gordon Smyth 53k • written 4.6 years ago by athief ▴ 20

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designmatrix DifferentialExpression edgeR RNAseq

4.7 years ago nageshprabhu.k ▴ 10

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MutlipleFactors DesignMatrix edgeR

4.7 years ago Debayan ▴ 20

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edgeR pairedsamples designmatrix

4.7 years ago sfidemw • 0

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deseq2 miRNASeq designmatrix Batch

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by anshulmbi • 0

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edger r differentialanalysis rnaseq designmatrix

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by Beginner ▴ 60

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Limma designMatrix

updated 7.3 years ago by Aaron Lun ★ 29k • written 7.3 years ago by Keifa ▴ 10

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limma microarray designmatrix

updated 9.2 years ago by Aaron Lun ★ 29k • written 9.2 years ago by nashchem • 0

16 results • Page 1 of 1

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

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Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

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