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designMatrix
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2
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596
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Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
limma
DifferentialExpression
Designmatrix
8 months ago
Tadeoye
▴ 20
0
votes
1
reply
520
views
Deseq2 design matrix
DESeq2
Designmatrix
limma
updated 14 months ago by
James W. MacDonald
68k • written 14 months ago by
Neha
• 0
0
votes
3
replies
882
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 16 months ago by
Gordon Smyth
52k • written 16 months ago by
prity6459
• 0
0
votes
1
reply
534
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 17 months ago by
Gordon Smyth
52k • written 17 months ago by
avery
• 0
3
votes
5
replies
1.6k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 2.6 years ago by
Michael Love
43k • written 2.6 years ago by
aditya.m
▴ 10
4
votes
6
replies
1.7k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
2.7 years ago
Abdul
▴ 20
2
votes
4
replies
1.9k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 3.9 years ago by
Gordon Smyth
52k • written 3.9 years ago by
rebecca.lea.johnston
• 0
0
votes
3
replies
1.6k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 3.9 years ago by
swbarnes2
★ 1.4k • written 3.9 years ago by
OST
• 0
1
vote
2
replies
1.5k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 4.4 years ago by
Gordon Smyth
52k • written 4.4 years ago by
athief
▴ 20
1
vote
0
replies
942
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
4.5 years ago
nageshprabhu.k
▴ 10
2
votes
4
replies
1.4k
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
4.6 years ago
Debayan
▴ 20
0
votes
2
replies
1.4k
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
4.6 years ago
sfidemw
• 0
0
votes
2
replies
1.1k
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
anshulmbi
• 0
0
votes
2
replies
1.2k
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 6.3 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
Beginner
▴ 60
2
votes
6
replies
1.6k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 7.2 years ago by
Aaron Lun
★ 29k • written 7.2 years ago by
Keifa
▴ 10
2
votes
4
replies
1.8k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 9.1 years ago by
Aaron Lun
★ 29k • written 9.1 years ago by
nashchem
• 0
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Comment: EuroBioC2024 abstract submission is open!
by
Finnianfly
• 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
Comment: Length of 'dimnames' [1] not equal to array extent
by
Francesco Silvestro
• 0
Resolved the error message!
Comment: WGCNA analysis on RNAseq and proteoimcs data
by
sum31278
• 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning
by
inadequate.peacock.iiag
• 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design
by
Gordon Smyth
52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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