Bioconductor Dexseq

Showing : dexseq • reset

votes

replies

views

DEXSeq

1 day ago • updated 11 hours ago Sara • 0

votes

128

views

DEXSeq

updated 8 days ago by Michael Love 42k • written 8 days ago by Sara • 0

votes

replies

views

DEXSeq SGSeq

20 days ago • updated 15 days ago Sara • 0

votes

replies

179

views

DEXSeq

updated 14 days ago by Alejandro Reyes ★ 1.9k • written 26 days ago by Alessia • 0

votes

163

views

DEXSeq

updated 26 days ago by Alejandro Reyes ★ 1.9k • written 28 days ago by Clyde • 0

votes

121

views

DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 26 days ago by Michael Love 42k • written 26 days ago by 09191919 • 0

votes

replies

139

views

DEXSeq DEXSeqNAvalues DEXseq

9 weeks ago jean-christophe.helbling • 0

votes

replies

429

views

DEXSeq

3 months ago • updated 11 weeks ago thomas.heigl.ibk • 0

votes

replies

390

views

DEXSeq stageR

6 months ago jbono ▴ 10

vote

404

views

DEXSeq DRIMSeq DEXSeqDataSet columnduplication

6 months ago NiKo ▴ 10

votes

replies

672

views

DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

votes

replies

798

views

DEXSeq biomaRt

updated 9 months ago by Hervé Pagès 16k • written 9 months ago by anavmar1 • 0

votes

replies

575

views

DEXSeq HTSeq R

9 months ago • updated 8 months ago yr542 • 0

votes

replies

1.8k

views

DESeq2 glmGamPoi DEXSeq

updated 10 months ago by alexandresegers ▴ 20 • written 18 months ago by jeremymsimon ▴ 20

vote

replies

874

views

DEXSeq exon_definition exon

updated 10 months ago by Alejandro Reyes ★ 1.9k • written 10 months ago by zhangpeng1202 • 0

votes

replies

393

views

isofor DEXSeq DifferentialSplicing

11 months ago nick_brittain55 • 0

votes

replies

406

views

DEXSeq

11 months ago vipul14 • 0

17 results • Page 1 of 1

Recent ...

Replies

Answer: Assymetric MA plot with no overall trend by Michael Love 42k

> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …

Comment: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

I'm wondering about sample table mixup. How have you merged your sequencing data with the phenotype data (`colData`)?

Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0

Thanks @mikelove , Using vst or rlog doesn't improve the segregation nor is there a remarkable difference when I use 1000 or 2000 most vari…

Answer: Batch effect correction: methylome data by zhouwanding ▴ 10

I agree that the batch variable should be better modeled as a co-variate than explicit batch correction. There is also RUVm (https://www.nc…

Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0

Thanks @bioinfguru - I did the 3-D PCA plot ![PC1 vs PC3 plot][1] and also the scree plot ![Scree plot][2] but couldn't make much of the…

Votes

Ensembl 112 has been released.

A: Diffbind results - non uniform width

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Answer: Error EPICv2 ChAMP

Comment: Store output of matchPWM()

Awards • All