Bioconductor Dexseq

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1.8k

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DESeq2 glmGamPoi DEXSeq

updated 10 months ago by alexandresegers ▴ 20 • written 19 months ago by jeremymsimon ▴ 20

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878

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DEXSeq exon_definition exon

updated 10 months ago by Alejandro Reyes ★ 1.9k • written 10 months ago by zhangpeng1202 • 0

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805

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DEXSeq biomaRt

updated 9 months ago by Hervé Pagès 16k • written 9 months ago by anavmar1 • 0

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684

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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581

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DEXSeq HTSeq R

9 months ago • updated 8 months ago yr542 • 0

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437

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DEXSeq

3 months ago • updated 11 weeks ago thomas.heigl.ibk • 0

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410

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DEXSeq DRIMSeq DEXSeqDataSet columnduplication

6 months ago NiKo ▴ 10

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408

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DEXSeq

11 months ago vipul14 • 0

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396

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isofor DEXSeq DifferentialSplicing

11 months ago nick_brittain55 • 0

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392

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DEXSeq stageR

6 months ago jbono ▴ 10

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184

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DEXSeq

updated 16 days ago by Alejandro Reyes ★ 1.9k • written 28 days ago by Alessia • 0

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165

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DEXSeq

updated 28 days ago by Alejandro Reyes ★ 1.9k • written 4 weeks ago by Clyde • 0

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142

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DEXSeq

updated 10 days ago by Michael Love 42k • written 10 days ago by Sara • 0

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142

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DEXSeq DEXSeqNAvalues DEXseq

9 weeks ago jean-christophe.helbling • 0

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124

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 28 days ago by Michael Love 42k • written 28 days ago by 09191919 • 0

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DEXSeq SGSeq

22 days ago • updated 17 days ago Sara • 0

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DEXSeq

updated 1 day ago by Alejandro Reyes ★ 1.9k • written 3 days ago by Sara • 0

17 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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