Showing : ebseq • reset
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.0 years ago by 65k • written 10.0 years ago by ▴ 10
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.1 years ago by ▴ 10 • written 10.1 years ago by ▴ 100
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.1 years ago by ▴ 10 • written 10.1 years ago by 50k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
8.9 years ago jackipchiho ▴ 10
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.1 years ago jbarker2 • 0
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
8.6 years ago vieuphoria ▴ 10
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.3 years ago Dario Strbenac ★ 1.5k
5
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1.0k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 5.9 years ago by ★ 28k • written 5.9 years ago by • 0
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.0 years ago jean.keller ▴ 10
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932
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[EBSEQ] Strange NA values
ebseq differential gene expression
7.9 years ago jean.keller ▴ 10
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919
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Heatmap for ebseq2 output
ebseq
5.0 years ago drkousi31 • 0
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915
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
8.8 years ago jbarker2 • 0
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1
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571
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.0 years ago lli2 • 0
13 results • Page 1 of 1
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Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
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