Showing : ebseq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.8 years ago lli2 • 0
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1.2k
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Heatmap for ebseq2 output
ebseq
5.9 years ago drkousi31 • 0
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1.2k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.7 years ago by ★ 28k • written 6.7 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.7 years ago jean.keller ▴ 10
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.8 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.4 years ago vieuphoria ▴ 10
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.7 years ago jbarker2 • 0
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1.6k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.7 years ago jackipchiho ▴ 10
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1.5k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.9 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 10
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.9 years ago by ▴ 10 • written 10.9 years ago by 52k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.0 years ago by ▴ 10 • written 11.0 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
11.2 years ago Dario Strbenac ★ 1.6k
13 results • Page 1 of 1
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Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Votes
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
A: Is logFC a log2 fold change or some other base in scran::findMarkers
Comment: Error in retrieving clinical data
What is the cheapest day to fly on American Airlines? {Ask_Expert}
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