Showing : ebseq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.2 years ago lli2 • 0
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3
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1.0k
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Heatmap for ebseq2 output
ebseq
5.2 years ago drkousi31 • 0
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1.1k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.1 years ago by ★ 28k • written 6.1 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.1 years ago jean.keller ▴ 10
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981
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.2 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
8.8 years ago vieuphoria ▴ 10
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.0 years ago jbarker2 • 0
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1.5k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.1 years ago jackipchiho ▴ 10
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1.4k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.3 years ago jbarker2 • 0
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2
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2.9k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.2 years ago by 66k • written 10.2 years ago by ▴ 10
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1.7k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.3 years ago by ▴ 10 • written 10.3 years ago by 51k
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1.8k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.3 years ago by ▴ 10 • written 10.3 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.5 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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