Showing : ebseq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
3.9 years ago lli2 • 0
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3
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Heatmap for ebseq2 output
ebseq
5.0 years ago drkousi31 • 0
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1.0k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
7.8 years ago jean.keller ▴ 10
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932
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.0 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
8.5 years ago vieuphoria ▴ 10
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912
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
8.8 years ago jbarker2 • 0
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1.4k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
8.8 years ago jackipchiho ▴ 10
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1.3k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.0 years ago jbarker2 • 0
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2
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2.8k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.0 years ago by 65k • written 10.0 years ago by ▴ 10
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1.6k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.1 years ago by ▴ 10 • written 10.1 years ago by 50k
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1.7k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.1 years ago by ▴ 10 • written 10.1 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.3 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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