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7.9k

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deseq2 edgeR rna-seq

updated 29 days ago by Elizabeth • 0 • written 8.9 years ago by gthm ▴ 30

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1.7k

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salmon edgeR tximport nf-core gene_counts

updated 28 days ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

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619

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fgsea edgeR

14 days ago • updated 10 days ago gene_bioconductor ▴ 10

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464

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edgeR

29 days ago • updated 25 days ago Jonathan ▴ 10

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367

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rna-seq edgeR

updated 26 days ago by Gordon Smyth 50k • written 5 weeks ago by Netanel • 0

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304

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limma edgeR RNASeq

updated 7 days ago by Gordon Smyth 50k • written 29 days ago by Shaimaa Gamal • 0

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220

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 2 days ago by Gordon Smyth 50k • written 3 days ago by Ashley • 0

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209

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subsettingdata edgeR designmatrix

updated 28 days ago by Gordon Smyth 50k • written 28 days ago by prity6459 • 0

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201

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edgeR

written 23 days ago by k___ ▴ 30

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172

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RNASeqData edgeR

updated 14 days ago by Gordon Smyth 50k • written 14 days ago by z_bahari • 0

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147

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DGEList edgeR

28 days ago prity6459 • 0

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108

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design glm edgeR

updated 1 day ago by Gordon Smyth 50k • written 2 days ago by Guillermo • 0

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Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Koen Van den Berge ▴ 180