Bioconductor DGEList

Showing : DGEList • reset

votes

replies

386

views

DGEList edgeR

7 months ago prity6459 • 0

votes

replies

787

views

edgeR Bioconductor Dseq2 dgelist

updated 23 months ago by Gordon Smyth 52k • written 23 months ago by Fiona • 0

vote

1.1k

views

factors edgeR setup DGELIst

updated 3.6 years ago by Gordon Smyth 52k • written 3.6 years ago by Alex • 0

votes

replies

2.1k

views

edger DGElist

updated 5.7 years ago by Gordon Smyth 52k • written 5.7 years ago by naser.sadri • 0

votes

replies

1.9k

views

dgelist edger RnaSeqGeneEdgeRQL

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by Kevin • 0

vote

replies

2.4k

views

edgeR summarizedexperiment dgelist

6.6 years ago aljoscha.leusmann • 0

votes

replies

1.1k

views

tree bootstrap dgelist plotmds

6.7 years ago Larry K. • 0

votes

2.5k

views

edger dgelist NA egsea

updated 6.8 years ago by Gordon Smyth 52k • written 6.8 years ago by belmore • 0

votes

replies

4.0k

views

edger DGEList org.hs.eg.db gene annotation

updated 3.2 years ago by IIart.hubII • 0 • written 7.0 years ago by svlachavas ▴ 840

votes

replies

3.5k

views

egder dgelist group rnaseq

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by fawazfebin ▴ 60

votes

replies

3.6k

views

DGElist filter edgeR

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by alakatos ▴ 130

votes

replies

2.8k

views

edger raw reads TMM normalised values DGEList differential gene expression

updated 8.3 years ago by Steve Lianoglou ★ 13k • written 8.3 years ago by benedict.ng ▴ 30

votes

replies

7.1k

views

edger subsetting dgelist

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by mnaymik ▴ 10

vote

replies

21k

views

edgeR row.names DGEList

9.8 years ago ccheung • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: Running multiple KNN queries in parallel by SamGG ▴ 360

Thank you for your detailed answer, I appreciate it and your work.

Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k

That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …

Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k

The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…

Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k

I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…

Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

Votes

Answer: Running multiple KNN queries in parallel

Answer: RSubread output significantly different from bash Subread output

Answer: How to annotate a limma Elist raw class object with an annotation file

Awards • All

Scholar to Aaron Lun ★ 28k

Teacher to Michael Love 43k

Popular Question to Dario Strbenac ★ 1.5k

Scholar to ATpoint ★ 4.6k