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enmix
•
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0
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5
replies
1.2k
views
preprocessENmix colnames Error
ENmix
Preprocessing
16 months ago
Eve
• 0
1
vote
2
replies
798
views
How to get the DMR?
ENmix
17 months ago
Alex
• 0
0
votes
6
replies
1.7k
views
Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix
Bioconductor
updated 19 months ago by
kred
• 0 • written 19 months ago by
minardsmitha
▴ 10
0
votes
18
replies
4.0k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 4.8 years ago by
lea
• 0
0
votes
2
replies
1.5k
views
Help with ENmix readidat
ENmix
IlluminaHumanMethylationEPICmanifest
updated 19 months ago by
James W. MacDonald
68k • written 3.6 years ago by
Daphna
• 0
0
votes
0
replies
1.1k
views
can ENmix::oxBS.MLE be run on comBat-adjusted data?
ENmix
comBat
4.7 years ago
joannew
• 0
0
votes
0
replies
902
views
ENmix: how to combine oxBS.MLE with RCP?
ENmix
4.8 years ago
joannew
• 0
0
votes
1
reply
1.4k
views
could not find function "ComBat.mc"
ENmix
updated 5.1 years ago by
shepherl
4.2k • written 5.1 years ago by
ycding
▴ 20
1
vote
0
replies
891
views
Error in peak calling with Combp
ENmix
5.1 years ago
mwjnorris
▴ 10
0
votes
0
replies
975
views
Error for ENmix::bmiq.mc() on one sample
ENmix
6.8 years ago
moldach
▴ 20
0
votes
0
replies
1.6k
views
Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation
ENmix
BMIQ
wateRmelon
6.9 years ago • updated 6.8 years ago
moldach
▴ 20
1
vote
2
replies
1.4k
views
how to install ENmix github master branch on Ubuntu machine?
ENmix
written 9.3 years ago by
avilella
▴ 10
0
votes
4
replies
2.6k
views
ComBat: Adjustment for 3experimental variables
ENmix
combat.mc
illumina450k
combat sva
9.5 years ago
DSP
• 0
13 results • Page
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Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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